PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000356G0990
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 385aa    MW: 42240.9 Da    PI: 8.0709
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000356G0990genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS64.22.6e-2031100291355
             GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.......s 355
                      +r+i+nvv cegae   rhe l++Wr+rl+++GF+pv+l+++a+kqa++ll+ +  +dgyrve++       +
  PH01000356G0990  31 HRQICNVVVCEGAE---RHEMLGQWRNRLGRSGFEPVHLGSNAYKQASMLLALFTgGDGYRVEKDghettegE 100
                      79***********9...**********************************************8844444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.115191IPR005202Transcription factor GRAS
PfamPF035148.9E-1831100IPR005202Transcription factor GRAS
SMARTSM003201.3100138IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.109.3E-28104234IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS502949.573106237IPR017986WD40-repeat-containing domain
SuperFamilySSF509782.38E-24106244IPR017986WD40-repeat-containing domain
SMARTSM0032013143182IPR001680WD40 repeat
PfamPF128946.9E-5160228IPR024977Anaphase-promoting complex subunit 4, WD40 domain
SMARTSM003209.4E-6188228IPR001680WD40 repeat
PROSITE profilePS500829.706196228IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEISAATATA AASKPLLLCA LASSAPATIH HRQICNVVVC EGAERHEMLG QWRNRLGRSG  60
FEPVHLGSNA YKQASMLLAL FTGGDGYRVE KDGHETTEGE GGLELEAWHD QIVSGIDWSR  120
YSNKIVTVSH DRNSYVWTQE GHDWVPTLVI LKLNRAALCV QWSPKENKFA VGSGAKSVCI  180
CYYEQENNWW ISKVIRKKHE SSVTSVAWHP NNIHLATTST DGKCRVFSTF IKGVDTRGSQ  240
ASTSPDWKFG EILFVSERMV IGVGFDCNPM IFAADETGLW SFVRYLDERK VTPSTSKASQ  300
LSEALGKLYG QSKQGTSCGT VEPSKPRGGA HENCITIGRS MKSGPADVWP VGTCPVRGSP  360
YASAARLLET SHQLGQIWLY MMRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3dxk_C1e-4910926851213Actin-related protein 2/3 complex subunit 1B
3dxm_C1e-4910926851213Actin-related protein 2/3 complex subunit 1B
3rse_C1e-4910926851213Actin-related protein 2/3 complex subunit 1B
3ukr_C1e-4910926851213Actin-related protein 2/3 complex subunit 1B
3uku_C1e-4910926851213Actin-related protein 2/3 complex subunit 1B
3ule_C1e-4910926851213Actin-related protein 2/3 complex subunit 1B
4jd2_C1e-4910926851213Actin-related protein 2/3 complex subunit 1B
6dec_C1e-4910926851213Actin-related protein 2/3 complex subunit 1B
6dec_J1e-4910926851213Actin-related protein 2/3 complex subunit 1B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000356G0990
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0975300.0FP097530.1 Phyllostachys edulis cDNA clone: bphylf044j16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570399.11e-144actin-related protein 2/3 complex subunit 1B
SwissprotO808561e-105ARC1A_ARATH; Actin-related protein 2/3 complex subunit 1A
TrEMBLI1IDX51e-143I1IDX5_BRADI; Actin-related protein 2/3 complex subunit
STRINGBRADI3G55390.11e-144(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.15e-23GRAS family protein
Publications ? help Back to Top
  1. Mathur J,Spielhofer P,Kost B,Chua N
    The actin cytoskeleton is required to elaborate and maintain spatial patterning during trichome cell morphogenesis in Arabidopsis thaliana.
    Development, 1999. 126(24): p. 5559-68
    [PMID:10572033]
  2. Mathur J,Mathur N,Kernebeck B,Hülskamp M
    Mutations in actin-related proteins 2 and 3 affect cell shape development in Arabidopsis.
    Plant Cell, 2003. 15(7): p. 1632-45
    [PMID:12837952]
  3. Le J,El-Assal Sel-D,Basu D,Saad ME,Szymanski DB
    Requirements for Arabidopsis ATARP2 and ATARP3 during epidermal development.
    Curr. Biol., 2003. 13(15): p. 1341-7
    [PMID:12906796]
  4. Li S,Blanchoin L,Yang Z,Lord EM
    The putative Arabidopsis arp2/3 complex controls leaf cell morphogenesis.
    Plant Physiol., 2003. 132(4): p. 2034-44
    [PMID:12913159]
  5. Van Damme D,Bouget FY,Van Poucke K,Inzé D,Geelen D
    Molecular dissection of plant cytokinesis and phragmoplast structure: a survey of GFP-tagged proteins.
    Plant J., 2004. 40(3): p. 386-98
    [PMID:15469496]
  6. Nishal B,Tantikanjana T,Sundaresan V
    An inducible targeted tagging system for localized saturation mutagenesis in Arabidopsis.
    Plant Physiol., 2005. 137(1): p. 3-12
    [PMID:15644463]
  7. Szymanski DB
    Breaking the WAVE complex: the point of Arabidopsis trichomes.
    Curr. Opin. Plant Biol., 2005. 8(1): p. 103-12
    [PMID:15653407]