PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000357G1080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 242aa    MW: 24987.5 Da    PI: 8.276
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000357G1080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260144.23.9e-45281271100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++lp+++reda+ssl+yeAear++dPvyG+vg i+ lq+q+++l++el
  PH01000357G1080  28 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELPPHQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKEL 121
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      +++++e
  PH01000357G1080 122 DAAHAE 127
                      *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.83427128IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-4428125IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MASSSSTSNS AVSPVIAGAA TTPGAGSPCA ACKFLRRKCL PGCVFAPYFP PEEPQKFANV  60
HKVFGASNVT KLLNELPPHQ REDAVSSLAY EAEARVKDPV YGCVGAISVL QRQVHRLQKE  120
LDAAHAELLR YACGEVGIPT ALPVTAAPRL AAAMPAPGQF AAASAGMRRL GVVDGIVPPP  180
RPPTGCYYMR NNAGSVGADV APVLPYASMA NWTVNAISTT TTTSGSESIG MDRKEGGDSS  240
M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-86191472131LOB family transfactor Ramosa2.1
5ly0_B5e-86191472131LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000357G1080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9516390.0JQ951639.1 Loudetia sp. MCE-2012 Ramosa2 (ra2) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643800.11e-146PREDICTED: protein LATERAL ORGAN BOUNDARIES-like isoform X2
RefseqXP_006643801.21e-146PREDICTED: protein LATERAL ORGAN BOUNDARIES-like isoform X1
RefseqXP_015698431.11e-146PREDICTED: protein LATERAL ORGAN BOUNDARIES-like isoform X1
TrEMBLJ3KWR61e-145J3KWR6_ORYBR; Uncharacterized protein
STRINGOB01G14220.11e-146(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88133545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.43e-62LBD family protein