PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000358G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 290aa    MW: 31209.4 Da    PI: 10.0627
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000358G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-15112156347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  PH01000358G0250 112 PWTEDEHRKFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 156
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.049105161IPR017930Myb domain
SuperFamilySSF466892.92E-18106162IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-18108160IPR006447Myb domain, plants
SMARTSM007176.0E-12109159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-11109155IPR009057Homeodomain-like
CDDcd001671.92E-10112157No hitNo description
PfamPF002492.1E-12112156IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MARKCSICGN NGHNSRTCSG HRSLENSGGL RLFGVQLYAG SSSPLKKCFS MECLSSSASA  60
YYAAAVAASN SSPSVSSSSS LVSIDETTEK MTNGYLSDGL MGRAQERKKG VPWTEDEHRK  120
FLAGLEKLGK GDWRGISRHF VTTRTPTQVA SHAQKYFLRQ SSLTQKKRRS SLFDVVENGE  180
KATCVNERLR LKEETTPVSG MEFPTLSLGI SRPKTEAVLP PCLTLMPSCS SAVSNTSPNL  240
APKLPPALTA KPQVNLQTPD LELKISTSRQ ADHTGSSART PFFGTIRVS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000358G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643865.11e-116PREDICTED: transcription factor MYB1R1-like
RefseqXP_015625837.11e-116transcription factor MYBS3-like
TrEMBLA0A0A9ESZ51e-146A0A0A9ESZ5_ARUDO; Uncharacterized protein
STRINGLPERR01G05630.11e-123(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-50MYB_related family protein