PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000361G0970
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YA
Protein Properties Length: 338aa    MW: 36056.5 Da    PI: 8.2449
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000361G0970genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.27.3e-30179235158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d p+YVNaKQ+++I++RR +Rak+e+e+++ +++rkpylheSRh+hA+rR+RgsgGrF
  PH01000361G0970 179 DGPIYVNAKQFNGIIRRRLARAKAERENRI-SRNRKPYLHESRHRHAMRRARGSGGRF 235
                      57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.5E-34177238IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.798178238IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-22181203IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-29181235IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860183203IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.4E-22212235IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSFQEHGLGL QVITNRSGNG AAAAAMPWWT GAGSQPLLGE SFGQLSHAIM EGNHGVQDHH  60
QILAAGRQPH RAVDPSRPCQ AMPPERPFAA EGGVVKFPII SGDSDLGEEL KFQEPTVGAY  120
PALQEYQGRF ELALGQSMVC TNYGNPDQIY GVYSPYGAQA MHSQMKPGRM LLPSAIATDG  180
PIYVNAKQFN GIIRRRLARA KAERENRISR NRKPYLHESR HRHAMRRARG SGGRFLNTKN  240
LSGDHGTGGG PPPQSANTSP SSEGPDNNGG KISGNAGLTL SEATSVCPAQ DDMADIHAME  300
HLRSPSFFPL LTMDGGGGEA KWVTAAPQGC CVDLLKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-18179245268NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219228RHRHAMRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000361G0970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1015660.0FP101566.1 Phyllostachys edulis cDNA clone: bphyem205p17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645550.11e-93nuclear transcription factor Y subunit A-2
TrEMBLA0A0D9WVN44e-96A0A0D9WVN4_9ORYZ; Uncharacterized protein
STRINGLPERR07G03140.17e-97(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.23e-27nuclear factor Y, subunit A10