PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000363G0960
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 493aa    MW: 53617.1 Da    PI: 7.5886
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000363G0960genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07102124426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C++f+r G C+ Gd+C F+Hg
  PH01000363G0960 102 VPCPNFRRPGGCPCGDSCEFSHG 124
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.37598126IPR000571Zinc finger, CCCH-type
SMARTSM003560.01698125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-599127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5101126IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5102124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4130163IPR000571Zinc finger, CCCH-type
SMARTSM0035624134157IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MASGASSPPL SSSPDEGNRS PSSRSSSLSP ITVDRGKKEY PVDPTLPDIK SSVYATDDFR  60
MFAFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKHPYT AVPCPNFRRP GGCPCGDSCE  120
FSHGVFESWL HPSQYRTRLC KEGASCARRI CFFAHDEDEL RHVPHNSGAG LLSPRATSSI  180
DMTAAAALGL LPGSPTRHFV PPPVSPSAGN GGAAAAHWLQ GSRLRSSFNA RDVPVDDLGM  240
LLDWESQYLG ALCLPPSSRA QPRLSTGLSI RPTAIVPPNL EDMYASDMAM LPRFSNDQGH  300
SVYSPAHKSA VLNMLHQQKG LLSPVNTNRM YSPRALDPSA LIHSPFGGMS PRSPRTMEPA  360
SPLSARVGAT VTQREMFEQF SSLNKHQLPS VGSPRNSSWG NMGSPMGQVD WGVDGEELVR  420
LRRSDQSGLA EEEPDVSWVQ SLVSYAEQNG KRGEMAGMAS GSTNRPDRSN QADLLDQTVI  480
GAWLEQMHLD QK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A6e-11471572118RING finger protein unkempt homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000363G0960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657856.10.0PREDICTED: zinc finger CCCH domain-containing protein 50
RefseqXP_015695270.10.0PREDICTED: zinc finger CCCH domain-containing protein 50
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLJ3MM590.0J3MM59_ORYBR; Uncharacterized protein
STRINGOB07G24910.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-118CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]