PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000369G0610
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 99aa    MW: 11727.7 Da    PI: 10.9128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000369G0610genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-17453148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd +l  +v+q+G++ W+++a++m+  + R +k+c +rw +yl
  PH01000369G0610  4 RQRWRPEEDAILRAYVRQYGPREWNLVAQRMNvaLDRDAKSCLERWKNYL 53
                     89**********************************************97 PP
2Myb_DNA-binding25.53e-085988131
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                     +g+ T+eE+ l +++ +++G++ Wk+Ia+++
  PH01000369G0610 59 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEV 88
                     6788******************.*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.657157IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-18256IPR009057Homeodomain-like
SMARTSM007178.1E-13355IPR001005SANT/Myb domain
SuperFamilySSF466894.21E-21487IPR009057Homeodomain-like
CDDcd001675.34E-9653No hitNo description
PfamPF139212.5E-15767No hitNo description
Gene3DG3DSA:1.10.10.603.7E-125788IPR009057Homeodomain-like
PROSITE profilePS512949.6075898IPR017930Myb domain
SMARTSM007170.215897IPR001005SANT/Myb domain
CDDcd001670.001816388No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MKERQRWRPE EDAILRAYVR QYGPREWNLV AQRMNVALDR DAKSCLERWK NYLRPGIKKG  60
SLTEEEQRLV IRLQAKHGNK WKKIAAEVIR NVMVLLPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-14785782MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-14785782C-Myb DNA-Binding Domain
1msf_C1e-14785782C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000369G0610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1264893e-93AF126489.1 Zea mays rough sheath2 protein (rs2) gene, complete cds.
GenBankAF1434473e-93AF143447.1 Zea mays rough sheath 2 (rs2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105509.17e-54protein rough sheath 2
SwissprotQ9S7B26e-55RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A1E5V7B33e-54A0A1E5V7B3_9POAL; Protein rough sheath 2 (Fragment)
STRINGPavir.Cb00486.1.p2e-54(Panicum virgatum)
STRINGTRIUR3_13997-P14e-54(Triticum urartu)
STRINGGRMZM2G403620_P013e-53(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.11e-50MYB family protein