PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000371G0730

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HSF

Protein Properties

Length: 680aa MW: 75054 Da PI: 6.1706

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000371G0730	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	99	4.4e-31	1	86	9	103
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 +++d++++ ++sw +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i+r+k PH01000371G0730 1 MVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTINRRKP 85 899**********99*************************************999.........********************97 PP X CS HSF_DNA-bind 103 e 103 + PH01000371G0730 86 S 86 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.9E-33	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.45E-30	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.1E-49	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.7E-27	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-9	32	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	33	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-9	45	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MVDDPATDAV VSWGPGNNSF VVWNTPEFAR DLLPKYFKHS NFSSFVRQLN TYGFRKVDPD 60 RWEFANEGFL RGQKHLLKTI NRRKPSHGSS QVQQQQPQLQ NAPIPACVEV GKFGMGEEME 120 MLKRDKNVLM QELVRLRQQQ QTTDHQLQTL GKRLQGMEQR QKQMMSFLAK AMQNPSFLAQ 180 FVQQNEKSRR RIVAANKKRR LPKQDGGLDS DSALLDGQII KYQPLINEAA KAMLRKILNL 240 DSSHTLESMG NSDNFLLENY MPTAQGFDSS SSTGNSGVTL AEVPPANSGM PYMATSSGLS 300 AICSSSTPPE IQCPVVLDNN SPKELPNTSA VPSVAKAVAP GPSDINLPEF PDFQDIVTED 360 AVNIPGGIFE MPGPEGVFPL PDEGDDTVPI ETDEILFNDD TQKLPAIIDS FWEQFLVASP 420 LSVDNDEVDS GLPDTRETQQ ENAWVKTENL ANLTEQMGLL SSNHIGLWHG WSIPAAVAKH 480 RNLTKLSAWL DGASLIVRII KSCWIKLYDA VKMSCLDELP MIELESIKHL GRASSYMHWV 540 LTNDGAGGVV LGQFDGGAEE AVVVLVGGAG VAVADVGRPM LASQRTGRSP RRTPWSEMNR 600 MDQRILSLPL SCKWGGISGG YEIFCEHMDI RDPATSLRNQ RRREIQAYMT SGGGGTGRRR 660 LGKSKTGRDD WATTRRTQG*

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MVDDPATDAV VSWGPGNNSF VVWNTPEFAR DLLPKYFKHS NFSSFVRQLN TYGFRKVDPD  60
RWEFANEGFL RGQKHLLKTI NRRKPSHGSS QVQQQQPQLQ NAPIPACVEV GKFGMGEEME  120
MLKRDKNVLM QELVRLRQQQ QTTDHQLQTL GKRLQGMEQR QKQMMSFLAK AMQNPSFLAQ  180
FVQQNEKSRR RIVAANKKRR LPKQDGGLDS DSALLDGQII KYQPLINEAA KAMLRKILNL  240
DSSHTLESMG NSDNFLLENY MPTAQGFDSS SSTGNSGVTL AEVPPANSGM PYMATSSGLS  300
AICSSSTPPE IQCPVVLDNN SPKELPNTSA VPSVAKAVAP GPSDINLPEF PDFQDIVTED  360
AVNIPGGIFE MPGPEGVFPL PDEGDDTVPI ETDEILFNDD TQKLPAIIDS FWEQFLVASP  420
LSVDNDEVDS GLPDTRETQQ ENAWVKTENL ANLTEQMGLL SSNHIGLWHG WSIPAAVAKH  480
RNLTKLSAWL DGASLIVRII KSCWIKLYDA VKMSCLDELP MIELESIKHL GRASSYMHWV  540
LTNDGAGGVV LGQFDGGAEE AVVVLVGGAG VAVADVGRPM LASQRTGRSP RRTPWSEMNR  600
MDQRILSLPL SCKWGGISGG YEIFCEHMDI RDPATSLRNQ RRREIQAYMT SGGGGTGRRR  660
LGKSKTGRDD WATTRRTQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	5e-23	1	86	27	123	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000371G0730

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652039.1	0.0	PREDICTED: heat stress transcription factor A-1, partial
Refseq	XP_015630421.1	0.0	heat stress transcription factor A-1
Swissprot	Q84T61	0.0	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A0E0KLP9	0.0	A0A0E0KLP9_ORYPU; Uncharacterized protein
STRING	OPUNC03G38490.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-104	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]