PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000371G0960
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 323aa    MW: 34662.7 Da    PI: 5.9281
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000371G0960genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY536.9e-171511912059
                      S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        r+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  PH01000371G0960 151 IKRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 191
                      679******998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007745.6E-11144192IPR003657WRKY domain
PfamPF031066.9E-14149191IPR003657WRKY domain
SuperFamilySSF1182903.53E-14149193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-16149193IPR003657WRKY domain
PROSITE profilePS5081120.3153193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDMEETNAAT AQGDLADVVT RANAMAAVAS TYHHQPLPPA PAAAAAAHMP PHYPGQIMIP  60
YDEERRPMST VCGDAVMFEA RSTVDPYLSS AMAPHAAGYG LPQQHQQLAV QISQHACCGL  120
DMLMGGAAAA DDGDDAMRIS PLTPAAHHQM IKRGYYRCSS SKGCMARKQV ERSRSDPNML  180
VITYTAEHNH PWPMQRNVLA GYARAHTHAS TKNKQHKINM TDITSPTSSN NIHNYLASEQ  240
NAIGGDLDGR PANMMAASGN GVGAVDALGS GEGGVMYEPC NAIQPDEVFA ELEELEPDNS  300
MNINAANIYS RGVSYDQWHN KF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000371G0960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205061e-57AC120506.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBb0006O08 map S15179S, complete sequence.
GenBankAP0149591e-57AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-57CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980994.11e-79probable WRKY transcription factor 14
TrEMBLA0A368SBP92e-78A0A368SBP9_SETIT; Uncharacterized protein
TrEMBLK4AIL53e-78K4AIL5_SETIT; Uncharacterized protein
STRINGSi038727m5e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.19e-27WRKY DNA-binding protein 14