PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000378G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family S1Fa-like
Protein Properties Length: 81aa    MW: 8885.63 Da    PI: 10.4802
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000378G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA137.23.8e-431180270
             S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                     +v+++e+ kGlnPG+ivllvv+++ll+f+vgny+ly+yaqk+lPPrkkkPvskkk+k+eklkqGv++PGe
  PH01000378G0180 11 NVVIEEVnKGLNPGMIVLLVVATFLLLFFVGNYALYMYAQKTLPPRKKKPVSKKKMKKEKLKQGVSAPGE 80
                     67788888*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190134.0E-101280No hitNo description
PfamPF046891.1E-401680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MADQFADSAN NVVIEEVNKG LNPGMIVLLV VATFLLLFFV GNYALYMYAQ KTLPPRKKKP  60
VSKKKMKKEK LKQGVSAPGE *
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000378G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0920501e-133FP092050.1 Phyllostachys edulis cDNA clone: bphyem002h09, full insert sequence.
GenBankFP0930991e-133FP093099.1 Phyllostachys edulis cDNA clone: bphyst007n05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633609.17e-34DNA-binding protein S1FA2
SwissprotQ7XLX66e-35S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0D3FVJ51e-32A0A0D3FVJ5_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZKE56e-33A0A0D9ZKE5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H0D26e-33A0A0E0H0D2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P8S36e-33A0A0E0P8S3_ORYRU; Uncharacterized protein
STRINGOGLUM04G11330.11e-33(Oryza glumipatula)
STRINGORUFI04G12840.11e-33(Oryza rufipogon)
STRINGONIVA04G09610.11e-33(Oryza nivara)
STRINGOBART04G11650.12e-33(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.16e-07S1FA-like DNA-binding protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]