PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000382G0190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 584aa    MW: 64863.6 Da    PI: 4.6155
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000382G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.96e-1262145832374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cAea+s+ +  +aq+++++l++ ++ +g+p qR+aay++e+Laa++++s++++y+al+++e++   +  +l+a+++++ev+P++++++
  PH01000382G0190 214 KQLLFDCAEAISEYSIDEAQSIITELRQKVAIQGEPSQRIAAYLVEGLAATIQSSGKGIYRALRCKEAP---TLYQLSAMQILFEVCPCFRLGF 304
                      589*****************************************************************9...89999***************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aIlea  gee vHiiDfdi+qG Q+++L+q L + ++ p++lRiTgv++pes+      l+ +g+rL+k+Ae +gv+fef++ v  ++ 
  PH01000382G0190 305 MAANFAILEACRGEEIVHIIDFDINQGSQYITLIQFLRNNRNRPHHLRITGVDDPESVhrAVGGLKVIGQRLEKLAEDCGVSFEFRA-VGANIG 397
                      **************************************999***************99888899***********************.799*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      d+++ +L+++pgE+l+Vn+++ lh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e  +yysalfdsl+a+lpre+ +
  PH01000382G0190 398 DVTPAMLDCHPGETLIVNFAFLLHHLPDESVSIVNERDQLLRMVKGLQPKLVTLVEQDANTNTTPFLTRFREVYDYYSALFDSLDATLPRENPD 491
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF p p+++++ + +k+ll+ + +  y+ e+ ++ l +gW d++L++ SaW+
  PH01000382G0190 492 RMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMSMAGFVPSPFNSNVIDGIKSLLKSYCD-KYKFEKVHEGLHFGWGDKTLIVSSAWQ 583
                      ***************************************************************95.5*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.931187564IPR005202Transcription factor GRAS
PfamPF035142.1E-123214583IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MSFVRQADPS TSCAESPYVH KFGPPSSGFS TQRFSSDTEL IRHGPQPYNA EGFGQSGFTG  60
TPSAAFQSSF YNQQAAPTPY CVTVEGQTAP ALPYSQSESQ FNAATNSPVD SNISQQNSQS  120
ISENQSSDLE VEFDEDEIRL KLQELEHALF DDGDEVLFDL SGSINDECTD HMKNNNEWTN  180
PMKNILLPNS PKESSPESSL SCADSSNGEA RPPKQLLFDC AEAISEYSID EAQSIITELR  240
QKVAIQGEPS QRIAAYLVEG LAATIQSSGK GIYRALRCKE APTLYQLSAM QILFEVCPCF  300
RLGFMAANFA ILEACRGEEI VHIIDFDINQ GSQYITLIQF LRNNRNRPHH LRITGVDDPE  360
SVHRAVGGLK VIGQRLEKLA EDCGVSFEFR AVGANIGDVT PAMLDCHPGE TLIVNFAFLL  420
HHLPDESVSI VNERDQLLRM VKGLQPKLVT LVEQDANTNT TPFLTRFREV YDYYSALFDS  480
LDATLPRENP DRMNVERQCL AREIVNILAC EGPDRVERYE VAGKWRARMS MAGFVPSPFN  540
SNVIDGIKSL LKSYCDKYKF EKVHEGLHFG WGDKTLIVSS AWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5622058225377Protein SCARECROW
5b3h_D1e-5622058225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000382G0190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962026.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLK3Z5170.0K3Z517_SETIT; Uncharacterized protein
STRINGPavir.J01797.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]