PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000385G0170

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 215aa MW: 22701.7 Da PI: 10.3048

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000385G0170	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.5e-11	86	133	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq PH01000385G0170 86 SHSIAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 133 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.17E-10	80	137	No hit	No description
SuperFamily	SSF47459	1.96E-17	80	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.599	82	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	82	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-8	86	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-9	88	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MAGNPAIPDP PAKDANAGGE GSARKRKASA KGKAKEASSS VPVTATTNAS PKRSKVAAAS 60 AAAEEKPEPP KDYIHVRARR GQATDSHSIA ERVRRERISE RMKLLQSLVP GCNKITGKAL 120 MLDEIINYVQ SLQRQVEFLS MKLATMSPQL DFDGHYLPSR DMNQMAMPAY PSDDPASAFS 180 YTGSPLPPRT TKPATPSSPA AEAAPSAGSK TCRA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000385G0170

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108605	6e-93	AK108605.1 Oryza sativa Japonica Group cDNA clone:002-146-G10, full insert sequence.
GenBank	FO681395	6e-93	FO681395.1 Oryza rufipogon (W1943) Awn-1(An-1) full-length cDNA sequence: OR_W1943_cDNA_An-1, PCR product.
GenBank	FO681475	6e-93	FO681475.1 Oryza sativa ssp indica cv (Guangluai4) Awn-1(An-1) full-length cDNA sequence: OS_Guangluai4_cDNA_An-1, PCR product.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635665.2	8e-80	LOW QUALITY PROTEIN: transcription factor bHLH62
Swissprot	Q9SRT2	2e-53	BH062_ARATH; Transcription factor bHLH62
TrEMBL	Q0JDZ1	2e-80	Q0JDZ1_ORYSJ; OSJNBa0038P21.14 protein
STRING	OS04T0350700-01	3e-81	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12547	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	7e-48	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]