PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000392G1070

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

TALE

Protein Properties

Length: 127aa MW: 14666.9 Da PI: 10.4682

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000392G1070	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31	4.4e-10	59	93	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +yp++e++ +LA+ +gL+ +q+ +WF N+R ++ PH01000392G1070 59 RWPYPTEEDKVRLAAMTGLNPKQINNWFINQRKRH 93 569*****************************985 PP
2	ELK	34.8	3.5e-12	13	34	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ PH01000392G1070 13 ELKEMLLKKYSGCLSRLRSEFL 34 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51213	10.423	13	33	IPR005539	ELK domain
SMART	SM01188	3.6E-6	13	34	IPR005539	ELK domain
Pfam	PF03789	4.1E-9	13	34	IPR005539	ELK domain
PROSITE profile	PS50071	12.665	33	96	IPR001356	Homeobox domain
SMART	SM00389	1.8E-13	35	100	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.22E-20	35	104	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-27	38	98	IPR009057	Homeodomain-like
CDD	cd00086	9.58E-12	45	97	No hit	No description
Pfam	PF05920	5.8E-18	53	92	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	71	94	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MGQEHSSRLA DHELKEMLLK KYSGCLSRLR SEFLKKRKKG KLPKDARTAL LEWWNAHYRW 60 PYPTEEDKVR LAAMTGLNPK QINNWFINQR KRHWKPSEDM RFALMEGVAG GSSGTTLYFD 120 TGTIGP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	37	LRSEFLKKRK
2	34	38	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693}.
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693, ECO:0000269\|PubMed:10488233}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000392G1070

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007626	1e-116	AB007626.1 Oryza sativa Japonica Group HOS16 mRNA, partial cds.
GenBank	AK241312	1e-116	AK241312.1 Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967561.1	2e-79	homeobox protein knotted-1-like 1
Swissprot	A2Y007	5e-76	KNOSA_ORYSI; Homeobox protein knotted-1-like 10
Swissprot	Q7GDL5	5e-76	KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBL	A0A1E5WIJ8	4e-78	A0A1E5WIJ8_9POAL; Homeobox protein knotted-1-like 1
TrEMBL	A0A368R0G5	4e-78	A0A368R0G5_SETIT; Uncharacterized protein
TrEMBL	A0A3L6SUH9	2e-78	A0A3L6SUH9_PANMI; Homeobox protein knotted-1-like 1
TrEMBL	K3XMZ5	2e-78	K3XMZ5_SETIT; Uncharacterized protein
STRING	Si003268m	3e-79	(Setaria italica)
STRING	Sb03g012480.1	8e-79	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1698	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	3e-38	KNOTTED-like from Arabidopsis thaliana

Publications ? help Back to Top
Ito Y,Eiguchi M,Kurata N KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice. Genesis, 2001. 30(4): p. 231-8 [PMID:11536429] Postma-Haarsma AD, et al. Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice. Plant Mol. Biol., 2002. 48(4): p. 423-41 [PMID:11908517] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kuijt SJ, et al. Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice. Plant Mol. Biol., 2004. 55(6): p. 781-96 [PMID:15604716] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chu H, et al. A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J. Exp. Bot., 2013. 64(17): p. 5359-69 [PMID:24043854] Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Coudert Y, et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol., 2015. 206(1): p. 243-54 [PMID:25442012] Xu Y, et al. OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice. Plant J., 2015. 83(5): p. 806-17 [PMID:26121094] Kir G, et al. RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture. Plant Physiol., 2015. 169(1): p. 826-39 [PMID:26162429]