PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000397G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 480aa    MW: 50218.4 Da    PI: 4.8032
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000397G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS254.44.4e-7817047848374
             GRAS  48 ALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpps 141
                      AL+  l+     + +a +ps++++++++ +l a+k+fsevsP+l+f+hlt+ qa+l+++ g+ ++H +Dfdi++G QW++L+q+La+R +++  
  PH01000397G0230 170 ALRLALSP----TGEAPAPSASTPYDVVLKLRAYKAFSEVSPVLQFAHLTCVQAVLDELCGAGCIHMLDFDIGMGEQWASLMQELAQR-RPATA 258
                      66666665....78889999999****************************************************************9.7889* PP

             GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234
                      l++T+++sp+s++  el+ ++e+L++fA+elgv f+f v+   ++++l++ +L ++ +g+a+aV+l +   ++         + +++L++vk+l
  PH01000397G0230 259 LKVTALVSPASHHPLELQLIHENLSSFAAELGVLFQFAVF---NIDTLNPADLlAIASGDAVAVHLPVGSAHVA--------AMPAILRIVKRL 341
                      ***************************************9...888998877648888***********99998........4566******** PP

             GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                       +kvvv v++ +d+++ +F+e++++a++ ++ l++sl+a  +++++++ k+Er+l++++i+++v  ++++    + ++  W   + +aGF pv+
  PH01000397G0230 342 GAKVVVSVDRGCDRTELPFAEHLFQAFQSCVFLLESLDAV-GTDADTAGKIERFLVQPSIEQCVLGRHRA---AMDKALPWWTVFASAGFVPVQ 431
                      *************************************998.8999*******************998887...8889999************** PP

             GRAS 329 lsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                       s++a++qa++ll+k + +g+rve++  gsl+l+W++ +LvsvSaWr
  PH01000397G0230 432 TSTFAESQAESLLEKLPARGFRVENRaPGSLCLYWQRGELVSVSAWR 478
                      ************************77478999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.99984457IPR005202Transcription factor GRAS
PfamPF035141.5E-75170478IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MPLAGSAREG HAGILLLQQQ QEEGLSLPGL AAGKVSGAAG FWEPTSVLDR RHSPSPSPPT  60
SASTLSSPLG AAADVAALAG ANAKSVSPPP PAWLGGGTGE EAAAGVKEEW VHQLTPLDMG  120
LGGEGWDAGG AVLSDAAPSG LAPENTFLRW IIGGEDVSAA MAGVMDPPEA LRLALSPTGE  180
APAPSASTPY DVVLKLRAYK AFSEVSPVLQ FAHLTCVQAV LDELCGAGCI HMLDFDIGMG  240
EQWASLMQEL AQRRPATALK VTALVSPASH HPLELQLIHE NLSSFAAELG VLFQFAVFNI  300
DTLNPADLLA IASGDAVAVH LPVGSAHVAA MPAILRIVKR LGAKVVVSVD RGCDRTELPF  360
AEHLFQAFQS CVFLLESLDA VGTDADTAGK IERFLVQPSI EQCVLGRHRA AMDKALPWWT  420
VFASAGFVPV QTSTFAESQA ESLLEKLPAR GFRVENRAPG SLCLYWQRGE LVSVSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2619947880375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000397G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184487.10.0scarecrow-like protein 6
TrEMBLM8C2D30.0M8C2D3_AEGTA; Uncharacterized protein
STRINGEMT283940.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.18e-84GRAS family protein