PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000407G0480
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 255aa    MW: 26986.7 Da    PI: 9.0569
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000407G0480genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-1983137256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q ++Lee+F+ +++++ +++  LA++l+L  rqV vWFqNrRa+ k
  PH01000407G0480  83 RKKLRLSKDQATVLEECFKTHHTLTPKQKLALANSLNLRPRQVEVWFQNRRARTK 137
                      788899***********************************************98 PP
2HD-ZIP_I/II123.97.5e-4083173192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlsk+q+++LEe+F+++++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l een+rLekev+eLr +lk
  PH01000407G0480  83 RKKLRLSKDQATVLEECFKTHHTLTPKQKLALANSLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCEQLGEENRRLEKEVAELR-ALK 173
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-1954140IPR009057Homeodomain-like
SuperFamilySSF466891.5E-1871140IPR009057Homeodomain-like
PROSITE profilePS5007116.66579139IPR001356Homeobox domain
SMARTSM003897.3E-1681143IPR001356Homeobox domain
CDDcd000865.32E-1583140No hitNo description
PfamPF000461.1E-1683137IPR001356Homeobox domain
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
SMARTSM003404.0E-21139182IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-10139173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAPQRLDLGL SLGLGLGLAS QPQPSFCLIS GNVAAADQEV SPAAAEERTC SPGSPVSSGS  60
GKRSERSAGS GDEDDAGCDG NARKKLRLSK DQATVLEECF KTHHTLTPKQ KLALANSLNL  120
RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR WCEQLGEENR RLEKEVAELR ALKAVAPAGA  180
AAPLTTLTIC LSCKRVASSS CPTANAANLF AAANAGMPSP VLMPGHRQFF CGFRETGATY  240
GSSSGLAKAV KAAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000407G0480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812705.13e-90homeobox-leucine zipper protein HOX28-like
SwissprotA2Y9311e-73HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE51e-73HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A3B6RCL61e-100A0A3B6RCL6_WHEAT; Uncharacterized protein
TrEMBLA0A446X0G41e-100A0A446X0G4_TRITD; Uncharacterized protein
STRINGTraes_4AL_822582A19.11e-99(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-51homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]