PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000420G0650
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 194aa    MW: 21015.7 Da    PI: 4.3592
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000420G0650genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.2e-082184056
                     -HHHHHHHHHHHHHHHH CS
         Homeobox 40 terqVkvWFqNrRakek 56
                       rqV vWFqNrRa++k
  PH01000420G0650  2 APRQVAVWFQNRRARWK 18
                     579*************9 PP
2HD-ZIP_I/II75.21.2e-241563893
      HD-ZIP_I/II 38 lqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                     + prqvavWFqnrRAR+ktkqlE+d+++Lk+aydal+++++ L +++++Lr+++++
  PH01000420G0650  1 MAPRQVAVWFQNRRARWKTKQLEQDFDRLKAAYDALAADHQGLLSDNDRLRAQVAS 56
                     57*************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000861.37E-6121No hitNo description
PROSITE profilePS5007110.722120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-8227IPR009057Homeodomain-like
SuperFamilySSF466893.08E-7228IPR009057Homeodomain-like
PfamPF000461.0E-5318IPR001356Homeobox domain
PfamPF021835.2E-162062IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAPRQVAVWF QNRRARWKTK QLEQDFDRLK AAYDALAADH QGLLSDNDRL RAQVASLTEK  60
LQAKETSPSA TTTVAQEVDQ PDEHTTQQQL KEDLLSSGAT NDGSSSAVVL DVAEGTNHSG  120
ESTYFAGEGY KYNDCAGKHG GGALSSEEED GGAVSDEGCS FHLPAEDAIF AAGVVHHVAE  180
EEAQLGSWTS WFWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11220RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000420G0650
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0924930.0FP092493.1 Phyllostachys edulis cDNA clone: bphyem123k06, full insert sequence.
GenBankFP0978530.0FP097853.1 Phyllostachys edulis cDNA clone: bphyem205k19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235125.11e-97homeobox-leucine zipper protein HOX5
SwissprotQ6ZA744e-74HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
TrEMBLI1I7172e-96I1I717_BRADI; Uncharacterized protein
STRINGBRADI3G35850.14e-97(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-28homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]