PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000426G0080

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C3H

Protein Properties

Length: 653aa MW: 69588.5 Da PI: 7.6581

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000426G0080	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3.2e-07	214	234	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg PH01000426G0080 214 PCPDFRK-GVCRRGDMCEYAHG 234 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50297	12.594	1	65	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.33E-10	1	73	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.2E-12	1	73	IPR020683	Ankyrin repeat-containing domain
Pfam	PF13637	6.7E-8	3	54	No hit	No description
CDD	cd00204	4.23E-5	21	73	No hit	No description
PROSITE profile	PS50088	11.701	30	65	IPR002110	Ankyrin repeat
SMART	SM00356	1.1E-5	209	235	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.9E-4	213	236	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.375	214	236	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.1E-5	214	234	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-4	242	272	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	37	244	267	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:1.25.40.20	1.2E-12	503	517	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence Send to blast
MVAATYGSLA ALRLLLSLPS VDVNRRCSPD GTTALHCAAS GGSPSAVEAV KMLLVVGADA 60 EATDASGCRP ADVISVPPKM LDAKIALQDI LGCPKAEHAV LRVATPRATN SISPPVSSPT 120 AEDARSPSAA AMMTTKFADL PRVATSEKKE YPVDPSLPDI KNSIYASDEF RMYSFKIRPC 180 SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPDFRK GVCRRGDMCE YAHGVFECWL 240 HPAQYRTRLC KDGTSCNRRV CFFAHTTDEL RPLYVSTGSA VPSPRASATA AMEMAAAMGL 300 MPGSPSSVSA VMSPFTPPMS PSGNGMPPSL GWQQPNVPTL HLPGSSLQSS RLRTSLSARD 360 MPAGDYSLMQ DIDSQLINDL YSRLGSSAGN HTSRTKTLNP SNLDDLFSAE MVSSPRYSNA 420 DQGAMFSPSH KAAILNQFQQ QQQALLSPIN TGVFSPKAVE NQQLPSHSSL LQASLGMSSP 480 GRMSPRCVES GSPMSSHLAA ALAQREKQQQ TMRSLSSHDL GPSAARASAL VGSPLSSSWS 540 KWGSPSGTPD WGVNGEELGK LRRSSSFELR SGGDDPDLSW VHTLVKESPP EKQVTTSESI 600 NSVGPSPLMP PSVSNGEGSS LNTQLDGHDQ AAVIGALLER MQLDKQIGSL AT*

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence Send to blast

MVAATYGSLA ALRLLLSLPS VDVNRRCSPD GTTALHCAAS GGSPSAVEAV KMLLVVGADA  60
EATDASGCRP ADVISVPPKM LDAKIALQDI LGCPKAEHAV LRVATPRATN SISPPVSSPT  120
AEDARSPSAA AMMTTKFADL PRVATSEKKE YPVDPSLPDI KNSIYASDEF RMYSFKIRPC  180
SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPDFRK GVCRRGDMCE YAHGVFECWL  240
HPAQYRTRLC KDGTSCNRRV CFFAHTTDEL RPLYVSTGSA VPSPRASATA AMEMAAAMGL  300
MPGSPSSVSA VMSPFTPPMS PSGNGMPPSL GWQQPNVPTL HLPGSSLQSS RLRTSLSARD  360
MPAGDYSLMQ DIDSQLINDL YSRLGSSAGN HTSRTKTLNP SNLDDLFSAE MVSSPRYSNA  420
DQGAMFSPSH KAAILNQFQQ QQQALLSPIN TGVFSPKAVE NQQLPSHSSL LQASLGMSSP  480
GRMSPRCVES GSPMSSHLAA ALAQREKQQQ TMRSLSSHDL GPSAARASAL VGSPLSSSWS  540
KWGSPSGTPD WGVNGEELGK LRRSSSFELR SGGDDPDLSW VHTLVKESPP EKQVTTSESI  600
NSVGPSPLMP PSVSNGEGSS LNTQLDGHDQ AAVIGALLER MQLDKQIGSL AT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000426G0080

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794600.1	0.0	zinc finger CCCH domain-containing protein 24
Swissprot	Q10EL1	0.0	C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A2T7C2E7	0.0	A0A2T7C2E7_9POAL; Uncharacterized protein
STRING	Sb01g011150.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP823	37	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]