PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000428G0040

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB_related

Protein Properties

Length: 1308aa MW: 141478 Da PI: 6.4104

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000428G0040	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.1e-09	439	481	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E e + + +++G++ +++I++ ++ ++t +c+++++k+ PH01000428G0040 439 PWTQDEKEVFMEMLARFGKD-FSKISSFLQ-HKTTADCVEFYYKH 481 8***************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.62E-14	423	484	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.641	435	486	IPR017884	SANT domain
SMART	SM00717	7.7E-9	436	484	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-7	438	483	IPR009057	Homeodomain-like
Pfam	PF00249	2.9E-7	438	481	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.6	646	697	IPR017884	SANT domain
SMART	SM00717	4.5E-6	647	695	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.72E-9	650	697	IPR009057	Homeodomain-like
CDD	cd00167	1.42E-4	651	689	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1308 aa Download sequence Send to blast
MESNKDAPGA EIQACNDEVP IKLDQLGGDP IGSLANVLAE LLQHEDSCSG DSKRLTSTSK 60 LLLLNESITK ELEKTELEID SLEGELKSVN TEAGNRALKG SPTVVTCAQS PSPSYGTSKV 120 PASTCETTSP VKEQGEFTPS PKITVEQDAD VNGAELMEAK TAPVHNVKTV SSEESVACPG 180 VADAQISAAA DVVPLKLSEG IGAQIKVDSE RQEANSCHDN VNSMKADGSD DLSMRPCSYH 240 DDNYNLIPSI IATNNDIAKE ASELVFKPLS ADRTHLDLLA LSHLSSQRKN DLIIKEKLAI 300 RKNRLRFKEQ ILTFKFKVLR HLWKEDVRLL SMRKQRSKSN KRIDQVNRAS HSGSQRQRSS 360 NRSRLAMPAG NLSTFPITEI SDVANKLFSE FQVKRCRNYL KMPALIIDQK EKADARFISK 420 NALIEDPVSV EKEQAMINPW TQDEKEVFME MLARFGKDFS KISSFLQHKT TADCVEFYYK 480 HHKSDSFREV KKLLDLRQQQ KPTSNYLGTN SGKKWNPEAN AASLDMLGVA SVVAAHGLDY 540 ANRVEKISSK SILRTAYGSD IPFVTKGSTN KDSVGNVPLH ERESVAADVL AGICGTLSPE 600 GLGSCITSSA DPGQKISITR MEHLVTPEVD KSFGEEGTLS DQECEVDPVD WNDDEKSIFI 660 EAMNNYGKDF ARISSCVKSK SYEQCKVFFS KARKSLGLDL IHQGDVDVGL PTSDTNGGRS 720 DTDEACAAEM DSTICSTQSC SKMEMDVCPA VDGAIQGRPL SGITSKQPEA DDSNGPGVVD 780 VKVEEGEIKA DKNCNILVDH KRLSEATHQA SCVLIDINRP ESRENPQTTE GVNQVNIHGK 840 GAMASSTEQA AAAHLEIRSS LHSVEAIQSS KASEGICTEV SRTEGSSHHA PEGALMKSGN 900 STPSVCLPAE GGSKENVFHI SNMAGVSSIR PAFTSSYQNT MPADLLPSKP KPQVTPLTPK 960 DLMPVQFSSV LPDPTSIRFE GIASITTPNF EDHGKKVGNA SGAKDTNKFP TYKDQSSNQL 1020 DGLFRNIDGY MQQRRNHHLA TEVPVLSESI ASGTVGISQS DLFTLAKFQN GGSSGSSISN 1080 ATAGILWTGN GVDVREGLFR PCSHKASVES DEQLKRPGDV KLFGQILSHQ SSLQSSGSSS 1140 NGSKSKPPSP KIDRSAARLL NSSRDRLVYS SRPAITAHLG LEERAVRSYT HLDGSTVQPE 1200 PVLMVAKCQR SLAGVPFYSA KNGTLGVFTE YQQPLMRQFP SNPNLQKRNG MELISGFQQP 1260 GKGSRLGGTG ILVSGVTDPV AALKAQYGPG SNILSNDVDP WKDIGSR*

Sequence ? help Back to Top

Protein Sequence Length: 1308 aa Download sequence Send to blast

MESNKDAPGA EIQACNDEVP IKLDQLGGDP IGSLANVLAE LLQHEDSCSG DSKRLTSTSK  60
LLLLNESITK ELEKTELEID SLEGELKSVN TEAGNRALKG SPTVVTCAQS PSPSYGTSKV  120
PASTCETTSP VKEQGEFTPS PKITVEQDAD VNGAELMEAK TAPVHNVKTV SSEESVACPG  180
VADAQISAAA DVVPLKLSEG IGAQIKVDSE RQEANSCHDN VNSMKADGSD DLSMRPCSYH  240
DDNYNLIPSI IATNNDIAKE ASELVFKPLS ADRTHLDLLA LSHLSSQRKN DLIIKEKLAI  300
RKNRLRFKEQ ILTFKFKVLR HLWKEDVRLL SMRKQRSKSN KRIDQVNRAS HSGSQRQRSS  360
NRSRLAMPAG NLSTFPITEI SDVANKLFSE FQVKRCRNYL KMPALIIDQK EKADARFISK  420
NALIEDPVSV EKEQAMINPW TQDEKEVFME MLARFGKDFS KISSFLQHKT TADCVEFYYK  480
HHKSDSFREV KKLLDLRQQQ KPTSNYLGTN SGKKWNPEAN AASLDMLGVA SVVAAHGLDY  540
ANRVEKISSK SILRTAYGSD IPFVTKGSTN KDSVGNVPLH ERESVAADVL AGICGTLSPE  600
GLGSCITSSA DPGQKISITR MEHLVTPEVD KSFGEEGTLS DQECEVDPVD WNDDEKSIFI  660
EAMNNYGKDF ARISSCVKSK SYEQCKVFFS KARKSLGLDL IHQGDVDVGL PTSDTNGGRS  720
DTDEACAAEM DSTICSTQSC SKMEMDVCPA VDGAIQGRPL SGITSKQPEA DDSNGPGVVD  780
VKVEEGEIKA DKNCNILVDH KRLSEATHQA SCVLIDINRP ESRENPQTTE GVNQVNIHGK  840
GAMASSTEQA AAAHLEIRSS LHSVEAIQSS KASEGICTEV SRTEGSSHHA PEGALMKSGN  900
STPSVCLPAE GGSKENVFHI SNMAGVSSIR PAFTSSYQNT MPADLLPSKP KPQVTPLTPK  960
DLMPVQFSSV LPDPTSIRFE GIASITTPNF EDHGKKVGNA SGAKDTNKFP TYKDQSSNQL  1020
DGLFRNIDGY MQQRRNHHLA TEVPVLSESI ASGTVGISQS DLFTLAKFQN GGSSGSSISN  1080
ATAGILWTGN GVDVREGLFR PCSHKASVES DEQLKRPGDV KLFGQILSHQ SSLQSSGSSS  1140
NGSKSKPPSP KIDRSAARLL NSSRDRLVYS SRPAITAHLG LEERAVRSYT HLDGSTVQPE  1200
PVLMVAKCQR SLAGVPFYSA KNGTLGVFTE YQQPLMRQFP SNPNLQKRNG MELISGFQQP  1260
GKGSRLGGTG ILVSGVTDPV AALKAQYGPG SNILSNDVDP WKDIGSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-14	397	488	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-14	397	488	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000428G0040

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010231802.1	0.0	uncharacterized protein LOC100825285
TrEMBL	A0A0Q3KAE0	0.0	A0A0Q3KAE0_BRADI; Uncharacterized protein
STRING	BRADI2G38160.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	6e-84	MYB family protein