PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000430G0510
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 211aa    MW: 23655.3 Da    PI: 8.3163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000430G0510genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.41.9e-203394259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59
                     +Dg++WrKYG K++++ +fpr YYrCt++   +Cp++k++++++ +dp +  +tY +eH+++
  PH01000430G0510 33 NDGHQWRKYGEKKINNCNFPRYYYRCTYKdnmNCPATKQIQQKDySDPPLYSVTYYNEHTCN 94
                     8***************************99999*******976538**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-231994IPR003657WRKY domain
SuperFamilySSF1182906.54E-222694IPR003657WRKY domain
PROSITE profilePS5081115.6862796IPR003657WRKY domain
SMARTSM007747.8E-313295IPR003657WRKY domain
PfamPF031066.3E-243393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSPVTSPRQS HLLGHGTRKE KCMRKVDTFA PHNDGHQWRK YGEKKINNCN FPRYYYRCTY  60
KDNMNCPATK QIQQKDYSDP PLYSVTYYNE HTCNSAFLPL TPTEFQLHNA SGKAVSICFD  120
SSGPQEPITN ASSPSSSAAR RSTPSENKNQ PLPRRSEAYS WGAGVVEQKP VCTELQSCST  180
ECQDAFSAGT VSEEMVDAGR FGSIRFFHFL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-143393968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000430G0510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0945130.0FP094513.1 Phyllostachys edulis cDNA clone: bphyst007p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631650.11e-135probable WRKY transcription factor 35
TrEMBLA0A0D9VTG41e-134A0A0D9VTG4_9ORYZ; Uncharacterized protein
STRINGOGLUM03G15660.11e-134(Oryza glumipatula)
STRINGORUFI03G16080.11e-134(Oryza rufipogon)
STRINGOS03T0321700-011e-134(Oryza sativa)
STRINGONIVA03G16490.31e-134(Oryza nivara)
STRINGOPUNC03G15030.51e-134(Oryza punctata)
STRINGORGLA03G0148400.11e-134(Oryza glaberrima)
STRINGOBART03G15470.11e-134(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-19WRKY DNA-binding protein 46