PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000431G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 253aa    MW: 27959.1 Da    PI: 9.7275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000431G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.2e-1168112554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+e+ErrRR+riN  +++Lr ++P a     k ++Ka+ L ++v+ +k+L
  PH01000431G0060  68 HSEAERRRRERINAHLATLRGMIPDA-----KQMDKATLLARVVNQMKDL 112
                      9*************************.....67***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.27263112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-1267131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-968112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1268123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1069118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.1E-6152213No hitNo description
SuperFamilySSF550211.64E-6152214No hitNo description
PROSITE profilePS5167110.065154231IPR002912ACT domain
CDDcd048739.41E-7156220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MATCQPCREG KQKQKEQHLH RGGCALPSVH RGTVLLPWQD SLAPPPTAPE LSSSSGRSAT  60
EEMALKIHSE AERRRRERIN AHLATLRGMI PDAKQMDKAT LLARVVNQMK DLKRTATEVT  120
QAMPIPPEAN EVTVQCYTGQ SRAAVGDDRT TYIRASVSCD DRPNLLADIA RAFHGLRLRA  180
LRADMTSLGG RTHHIFTLCS EEANLSVCLK SLKEAVRQAL ANVAFPEMVY SSSSRIKRQK  240
VLESHYSVMY SL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000431G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623162.12e-91putative transcription factor bHLH107
TrEMBLA0A0D9Y3K36e-93A0A0D9Y3K3_9ORYZ; Uncharacterized protein
STRINGOGLUM01G04250.11e-93(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-28bHLH family protein