PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000434G0400
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 255aa    MW: 28112.9 Da    PI: 8.0139
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000434G0400genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-18105159256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq   Le+ F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  PH01000434G0400 105 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALARQLNLRPRQVEVWFQNRRARTK 159
                      78889************************************************98 PP
2HD-ZIP_I/II123.97.6e-40105193190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rl+keq++lLE+ F+e+++L+p++Kv+lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr +
  PH01000434G0400 105 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCFETLTEENRRLHRELQQLR-A 193
                      69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-1894160IPR009057Homeodomain-like
SuperFamilySSF466898.55E-1997162IPR009057Homeodomain-like
PROSITE profilePS5007117.103101161IPR001356Homeobox domain
SMARTSM003892.5E-15103165IPR001356Homeobox domain
CDDcd000861.04E-15105162No hitNo description
PfamPF000461.9E-15105159IPR001356Homeobox domain
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PfamPF021832.4E-10161194IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.6E-20161204IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEETIAYIPR QLCMAQEEVG LALGLSLGSG HHQPKEQPPS QPCAVEPSLT LSLPADNGLT  60
APGRPLIAAV KRELRAEDDE EAAERALYSA ASPAAADDDE GCNSRKKLRL TKEQSALLED  120
RFKEHSTLNP KQKVALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCELL KRCFETLTEE  180
NRRLHRELQQ LRALNHPHPA GFFMSQLPAA TLSICPSCER VAGPPPAAAD RPTKAAGPGR  240
AAHFQFSPFT NSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109SRKKLRL
2153161RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000434G0400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0989840.0FP098984.1 Phyllostachys edulis cDNA clone: bphylf047o12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983488.11e-121homeobox-leucine zipper protein HOX15
SwissprotQ7G7376e-85HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLK4AE821e-120K4AE82_SETIT; Uncharacterized protein
STRINGPavir.Ib02193.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-61HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]