PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000435G0280
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YC
Protein Properties Length: 194aa    MW: 21034 Da    PI: 5.9297
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000435G0280genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC167.22e-52591612101
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      l++fw++q   ie ++dfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fdfl
  PH01000435G0280  59 LQTFWAEQyreIEATADFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFL 152
                      89*****99999********************************************************************************** PP

            NF-YC  93 vdivprdel 101
                      vdivprde 
  PH01000435G0280 153 VDIVPRDEA 161
                      *******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.22E-3154152IPR009072Histone-fold
PfamPF008083.4E-2180143IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.9E-3781158IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEPKSTTPPP PPVMGAPIVY PQASPYPPPG AGAYAHGPPL YAPPPGAASQ QAAAAQQHLQ  60
TFWAEQYREI EATADFKNHN LPLARIKKIM KADEDVRMIA AEAPVVFARA CEMFILELTH  120
RGWAHAEENK RRTLQKSDIA AAIARTEVFD FLVDIVPRDE AKDAEAAAAV AGIPHPAAGM  180
PATDPMAYYY VQPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5566158395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136RRTLQKS
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000435G0280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0924730.0FP092473.1 Phyllostachys edulis cDNA clone: bphyst032d09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574700.11e-86nuclear transcription factor Y subunit C-6
SwissprotQ9XE332e-79NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLI1I8833e-85I1I883_BRADI; Uncharacterized protein
STRINGBRADI3G39280.15e-86(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-58nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]