PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000436G0570

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HSF

Protein Properties

Length: 276aa MW: 30176.5 Da PI: 6.9293

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000436G0570	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	78.4	1.2e-24	29	88	2	61
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y PH01000436G0570 29 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYR 88 9**********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.6E-26	22	88	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.6E-26	25	186	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.04E-22	28	88	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	6.0E-21	29	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-14	29	52	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-14	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-14	80	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MAFLVERCGE MVVSMESSAH GGKPVPAPFL TKTYQLVDDP CTDHIVSWGE DDTTFVVWRP 60 PEFARDLLPN YFKHNNFSSF VRQLNTYRTG GSSPTSYSGR EPSTSSPRST GGSHRRRHHH 120 HLNPFSPPPP PPTHPVYHFQ EEPATTHGVS GGNDGGGGGD FLAALSEDNR QLRRRNSLLL 180 SELAHMKKLY NDIVYFLQNH VAPVTSPSST APQLPGAVVA SSCRLLELDT DSPPQRSAAA 240 VDDDTVKLFG VALQGTKKKR AHREEGDDHD KGSEV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-15	9	87	10	87	Heat shock factor protein 1
5d5v_B	1e-15	9	87	10	87	Heat shock factor protein 1
5d5v_D	1e-15	9	87	10	87	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000436G0570

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP101348	0.0	FP101348.1 Phyllostachys edulis cDNA clone: bphyst036a08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804091.1	1e-117	heat stress transcription factor B-4b-like
Swissprot	Q7XHZ0	1e-102	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A1E5VCU8	1e-117	A0A1E5VCU8_9POAL; Heat stress transcription factor B-4b
STRING	Pavir.J32257.1.p	1e-114	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	8e-41	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]