PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000437G0390
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 233aa    MW: 24914.3 Da    PI: 8.3871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000437G0390genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.21.5e-21102152155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GVr+++ +g+WvAeIrdp     +   r +lg+f+taeeAa+a++ a+++++g
  PH01000437G0390 102 SKFRGVRQRP-WGKWVAEIRDP-----HraVRKWLGTFDTAEEAARAYDVAALEFRG 152
                      79********.**********7.....338*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-32102160No hitNo description
SuperFamilySSF541712.68E-23102161IPR016177DNA-binding domain
PfamPF008472.2E-14102152IPR001471AP2/ERF domain
PROSITE profilePS5103225.014103160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32103161IPR001471AP2/ERF domain
SMARTSM003807.1E-37103166IPR001471AP2/ERF domain
PRINTSPR003674.4E-11104115IPR001471AP2/ERF domain
PRINTSPR003674.4E-11126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVPRLERAAG FQLPSTEQEN ALFLRALISV VAGDTAVPTL HPESAPPVAT AAAAAAACAR  60
CGVIGCLGCE SFAAAATGSS SEEECSVSWV KGGVGKRRRR GSKFRGVRQR PWGKWVAEIR  120
DPHRAVRKWL GTFDTAEEAA RAYDVAALEF RGQRAKLNFP AAAASASVSS WAVVQSQPLP  180
ESLREKCGSN AVSPVHVPQV PQQGRPMARE QEIWDGLQEI MMLDDGSFWS MP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20100160263ATERF1
3gcc_A3e-20100160263ATERF1
5wx9_A6e-201031601472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000437G0390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3748261e-69AK374826.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193084.12e-97ethylene-responsive transcription factor ERF109-like
TrEMBLA0A3B6NU934e-96A0A3B6NU93_WHEAT; Uncharacterized protein
TrEMBLA0A3B6QIA85e-96A0A3B6QIA8_WHEAT; Uncharacterized protein
TrEMBLA0A453PMV35e-96A0A453PMV3_AEGTS; Uncharacterized protein
STRINGOMERI02G31240.13e-93(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-15ethylene response factor 110