PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000437G0930
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25552.6 Da    PI: 5.2183
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000437G0930genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.11e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krie++  rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl  ++s
  PH01000437G0930  9 KRIESTAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 59
                     79*********************************************9986 PP
2K-box57.27.2e-20921712099
            K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      ++a+L++++ +    +R++ Ge+Le L+++eLqqLe++Le +l ++ ++K++ +leqi+el++k  +l een++Lr+++ 
  PH01000437G0930  92 KYANLNEQLAEASLRLRQMRGEELEGLNVEELQQLEKNLEAGLHRVLQTKDQQFLEQINELKRKSSQLVEENTQLRNQVS 171
                      5777888888888999************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.665161IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-36160IPR002100Transcription factor, MADS-box
CDDcd002657.30E-39275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-25323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-30375IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.87486176IPR002487Transcription factor, K-box
PfamPF014864.4E-1892170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MARERREIKR IESTAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSQFASS  60
SMNEIMDKYS THSKNLGKTD QPSLDLNLEH CKYANLNEQL AEASLRLRQM RGEELEGLNV  120
EELQQLEKNL EAGLHRVLQT KDQQFLEQIN ELKRKSSQLV EENTQLRNQV SQIPTAGKQV  180
VADTENVITE DGQSSESVMT ALHSGSSQDN DDGSDVSLTL GLPCVAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20173173MEF2C
5f28_B4e-20173173MEF2C
5f28_C4e-20173173MEF2C
5f28_D4e-20173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000437G0930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962320.0FP096232.1 Phyllostachys edulis cDNA clone: bphyst021h04, full insert sequence.
GenBankFP1013990.0FP101399.1 Phyllostachys edulis cDNA clone: bphylf025a16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105154.21e-154m26 protein
SwissprotQ9XJ661e-140MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A3Q8BXJ71e-156A0A3Q8BXJ7_BAMML; MADS22
STRINGGRMZM2G046885_P011e-154(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]