PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000448G0110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 270aa    MW: 28964.8 Da    PI: 9.9485
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000448G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-13125169347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+
  PH01000448G0110 125 PWSEEEHRLFLVGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKF 169
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.146118174IPR017930Myb domain
SuperFamilySSF466894.19E-17119175IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-17121173IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.1E-10122165IPR009057Homeodomain-like
SMARTSM007174.1E-10122172IPR001005SANT/Myb domain
PfamPF002499.5E-11125168IPR001005SANT/Myb domain
CDDcd001672.90E-9125170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MARRCSHCGS YGHNSRTCCV DVTAGQRDDD AMRCKGAAGL RLFGVQLRAA AAGANSPAAL  60
QLQKSYSMDC LQLRASPSLA SLLSSSSSSS LLLPIDEGSE RATDGYLSDG PHGGVAMRER  120
KKGVPWSEEE HRLFLVGLEK LGKGDWRGIS RSFVTTRTPT QVASHAQKFF LRQNSVGKKN  180
NKRRSSLFDM VQNCVGGRPT VSDRSNFKGT STSLPLKSMP IDRTRPSSKA SVPEPLVPVI  240
TEQAHGYGHH CSQLDLELGM SLSTPSIGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000448G0110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0598131e-75AK059813.1 Oryza sativa Japonica Group cDNA clone:006-205-B05, full insert sequence.
GenBankAK0685951e-75AK068595.1 Oryza sativa Japonica Group cDNA clone:J013154K05, full insert sequence.
GenBankHQ8588111e-75HQ858811.1 Oryza sativa Japonica Group isolate UT1191 MYB-related transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961036.33e-94transcription factor SRM1
TrEMBLA0A3L6R7094e-94A0A3L6R709_PANMI; Uncharacterized protein
STRINGPavir.J35324.1.p3e-99(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-46MYB_related family protein