PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000462G0320
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 333aa    MW: 35479.5 Da    PI: 10.0305
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000462G0320genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.4e-1596140347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Ia+++ ++Rt+ q+ s+ qky
  PH01000462G0320  96 PWTEEEHRTFLAGLEKLGKGDWRGIAKKFVTTRTPTQVASHAQKY 140
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.03789145IPR017930Myb domain
SuperFamilySSF466891.72E-1790145IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-1892144IPR006447Myb domain, plants
SMARTSM007171.2E-1193143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-1296139IPR009057Homeodomain-like
CDDcd001672.36E-1096141No hitNo description
PfamPF002491.4E-1296140IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MPQDSRPAGM RLFGVTIAPA PAPEADPPDR DPSPNPPVAV REDVMRKCKS MGNLAAAAAS  60
ASGDAGGAGD GYLSDGGLLQ SSGKRRRAQE RKKAVPWTEE EHRTFLAGLE KLGKGDWRGI  120
AKKFVTTRTP TQVASHAQKY FLRQTNPNKK KRRSSLFDMM SNDLSPGPNC PILPPSMAKV  180
HEMVAMTKQL QSSSLEGVSS SNTANLAPQV ARDLPPPVPS FKATNVDTSL SKMNHMEGIS  240
RTPLPFRPIP IIAEGTSSPT PATAYITAPA FQANLTACTT VFLSPQSYPS PFPPLKAEPP  300
AEKDLELTVA PPSQQTMTNI YSQNAVGVIQ VV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000462G0320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193360.11e-179uncharacterized protein LOC109779160 isoform X1
TrEMBLA0A3B6RGT11e-180A0A3B6RGT1_WHEAT; Uncharacterized protein
TrEMBLA0A446XIA51e-180A0A446XIA5_TRITD; Uncharacterized protein
STRINGTraes_7AL_9E45828B0.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.15e-36MYB_related family protein