PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000463G0800
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 174aa    MW: 18828.3 Da    PI: 9.9861
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000463G0800genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.43.3e-19781162159
                      -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +rsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  PH01000463G0800  78 ARSYYKCTYAGCNVRKHIERASSDPKAVITTYEGKHNHE 116
                      7*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.7E-1478118IPR003657WRKY domain
PfamPF031061.1E-1378116IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-1878118IPR003657WRKY domain
SMARTSM007743.9E-1079117IPR003657WRKY domain
PROSITE profilePS5081121.43679118IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAASLGPPRH ASSSVFAALL MSSSFSARAR PEGSGTPMLM VFHLWLGWTY GLDHDIVWAA  60
LMGWTITSCG LLMVLLQARS YYKCTYAGCN VRKHIERASS DPKAVITTYE GKHNHEPPVG  120
RGGNKNAGNS APSNSSQQKG QNSISSNQAS LTRTDFSNIN QRPIGVLQFK REE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-17791183877Probable WRKY transcription factor 4
2lex_A2e-17791183877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000463G0800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7308943e-88EU730894.1 Brachypodium distachyon clone BAC DB009L22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576063.16e-54probable WRKY transcription factor 3
TrEMBLC3SA503e-52C3SA50_BRADI; WRKY-like protein
TrEMBLI1II621e-52I1II62_BRADI; Uncharacterized protein
STRINGBRADI4G06690.12e-53(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.18e-19WRKY DNA-binding protein 33