PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000468G1050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 221aa    MW: 22734.4 Da    PI: 6.0846
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000468G1050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.72.2e-20100134135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  PH01000468G1050 100 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 134
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-1994151IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.03594130IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-1496135No hitNo description
Gene3DG3DSA:3.30.50.105.8E-1799134IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.35E-1499131No hitNo description
PROSITE patternPS003440100125IPR000679Zinc finger, GATA-type
PfamPF003204.7E-18100134IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSLLFAAAPG DHHHYKQCGD EEAGGFDGSA YGGSVDCTLS  60
LGTPSTRRAE AGARVPAAVA GLPWEAVPSC NGRTDQANAC ANCDTTSTPL WRNGPRGPKS  120
LCNACGIRYK KEERRAAAAA VAPTALPSDS GVEYAYGYAR QQQQQWGCYG SAVAKAASFG  180
MFSDAAAEDG PCLPWGLGVM PSASPAFGAV REMPSLFQYY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000468G1050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032846e-96AP003284.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671D01.
GenBankAP0149576e-96AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126096e-96CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184096.11e-113GATA transcription factor 20-like
TrEMBLA0A3B6GXH21e-112A0A3B6GXH2_WHEAT; Uncharacterized protein
TrEMBLA0A453F6761e-112A0A453F676_AEGTS; Uncharacterized protein
STRINGMLOC_5372.11e-111(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.14e-24GATA transcription factor 19