PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000469G0440

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Protein Properties

Length: 370aa MW: 42744.9 Da PI: 8.1467

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000469G0440	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.1	1e-15	133	221	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +t+s+v+ +l lp +f +++ + +++ t+tl de +++ +i k++ l++GW++F+ +++L +gD +vF+l++r +f+ ++ PH01000469G0440 133 FVKPMTQSHVTGGFWLGLPTQFGRKYL-P-KRDETITLVDEVDDEFDTFYIAHKRG----LSAGWRGFAIDHKLVDGDCLVFQLIERAKFKVLI 220 89**********************5.3.35669***********555554....9**********************999997776 PP E CS B3 95 k 95 + PH01000469G0440 221 H 221 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.2E-20	127	223	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-23	127	223	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.86E-24	131	222	No hit	No description
PROSITE profile	PS50863	10.912	133	224	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-13	133	222	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-15	133	225	IPR003340	B3 DNA binding domain
Pfam	PF06839	3.6E-6	290	330	IPR010666	Zinc finger, GRF-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MAEAISYEEQ RRRQVEENKR KLDELRLHHL SVAVRETAAA KASPTKSLKR KARALRGAGE 60 NAPLRRSGRL SSLPEQPKYR DDSWGGFEKK IRRTYSTRRD LSDRVYATDE ERAYAITEAE 120 ELEDKLGSDH PIFVKPMTQS HVTGGFWLGL PTQFGRKYLP KRDETITLVD EVDDEFDTFY 180 IAHKRGLSAG WRGFAIDHKL VDGDCLVFQL IERAKFKVLI HCYQMKIIKL LMTDFILFPT 240 LRCSSELDLP ELDRTSLRME IERVGGLRCK VPLYMEDSDY CGEELGTQVR CRCGLRPKRR 300 VAWEGGDTGR RFLGCPMKEE EECGFVQRVD AEWPPRVQKT IEQMWDIMDH MNKKYEVQLT 360 LVPHSPGQA*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MAEAISYEEQ RRRQVEENKR KLDELRLHHL SVAVRETAAA KASPTKSLKR KARALRGAGE  60
NAPLRRSGRL SSLPEQPKYR DDSWGGFEKK IRRTYSTRRD LSDRVYATDE ERAYAITEAE  120
ELEDKLGSDH PIFVKPMTQS HVTGGFWLGL PTQFGRKYLP KRDETITLVD EVDDEFDTFY  180
IAHKRGLSAG WRGFAIDHKL VDGDCLVFQL IERAKFKVLI HCYQMKIIKL LMTDFILFPT  240
LRCSSELDLP ELDRTSLRME IERVGGLRCK VPLYMEDSDY CGEELGTQVR CRCGLRPKRR  300
VAWEGGDTGR RFLGCPMKEE EECGFVQRVD AEWPPRVQKT IEQMWDIMDH MNKKYEVQLT  360
LVPHSPGQA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000469G0440

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010227844.1	1e-119	B3 domain-containing protein Os06g0194400
Refseq	XP_010227845.1	1e-119	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-117	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	I1GZP0	1e-118	I1GZP0_BRADI; Uncharacterized protein
STRING	BRADI1G45517.1	1e-119	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-54	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]