PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000478G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 160aa    MW: 17280.2 Da    PI: 4.728
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000478G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.49.1e-11136156222
                      --SS-EEEEEEE--TT-SS-E CS
             WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                      +Dgy+WrKYGqK +k++++pr
  PH01000478G0060 136 SDGYRWRKYGQKLIKNNPHPR 156
                      7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.599130159IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-10130156IPR003657WRKY domain
SuperFamilySSF1182907.72E-9134157IPR003657WRKY domain
PfamPF031061.1E-7137156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MDDMDIWSGE LDEQLVNELL NDDELLMMMS TALSTTTPTA DCFDSCTSST GAMLSGSTPA  60
DQEPPAAVRN ALPSAYSGPT IQDVEKALAS QCPPSTSTRR SASPSFLFEP WGSRGSAEIN  120
SKYTARVRSS GGKLPSDGYR WRKYGQKLIK NNPHPRWAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000478G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148290.14e-32WRKY transcription factor WRKY24-like isoform X1
TrEMBLA0A453FWU77e-32A0A453FWU7_AEGTS; Uncharacterized protein
TrEMBLF2DFL94e-31F2DFL9_HORVV; Predicted protein
STRINGMLOC_19031.28e-33(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-11WRKY DNA-binding protein 49