PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000478G0680
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 179aa    MW: 19246.5 Da    PI: 7.9967
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000478G0680genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011108130123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cg  F+    L  H+r+H
  PH01000478G0680 108 HECAVCGLEFPMGQALGGHMRRH 130
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.1E-95780IPR007087Zinc finger, C2H2
PROSITE profilePS501579.395885IPR007087Zinc finger, C2H2
SMARTSM003552.55880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SuperFamilySSF576672.17E-6106135No hitNo description
PfamPF139121.2E-11107132IPR007087Zinc finger, C2H2
SMARTSM003550.77108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.801108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTLTREGRAA ERSGMESLHR AHADAQLTRY SALPPPAGAE AAAGSGRDVR RVRAAGAFEC  60
RTCSRRFPSF QALGGHRTGH TRLHARHALQ QHHGPEHAEA GGKQARAHEC AVCGLEFPMG  120
QALGGHMRRH RGEAPAPAEA RVEQPEMLDL NHPPLEDRGG DQGVECSESE PRLLNLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000478G0680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567258.12e-41zinc finger protein ZAT11
TrEMBLA0A077RVZ26e-43A0A077RVZ2_WHEAT; Uncharacterized protein
TrEMBLA0A446Q4T16e-43A0A446Q4T1_TRITD; Uncharacterized protein
TrEMBLA0A453FW536e-43A0A453FW53_AEGTS; Uncharacterized protein
STRINGOPUNC05G16930.11e-41(Oryza punctata)
STRINGOPUNC05G16960.11e-41(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-22C2H2 family protein