PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000479G0550

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Protein Properties

Length: 308aa MW: 33619.2 Da PI: 10.5035

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000479G0550	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	96.7	1.5e-30	2	96	1	89
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ PH01000479G0550 2 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldAAANEKGLLLSFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGvGEaAP 96 89*************************955556888**********************************************954344344 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	4.78E-26	1	89	No hit	No description
SuperFamily	SSF101936	3.01E-28	1	101	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.4E-39	1	108	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	4.6E-22	2	104	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.3E-28	2	105	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.607	2	104	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MFDKVVTPSD VGKLNRLVIP KQYAEKYFPL DAAANEKGLL LSFEDRAGKP WRFRYSYWNS 60 SQSYVMTKGW SRFVKEKRLD AGDTVSFSRG VGEAAPHRLF IDWKRRADTR DPLRLPRLPL 120 PMSLTSHYSP WGLGVGGGGG GFFMPPSPPA TLYEHRLRQG LDFRSMNPAM GRQLLFFGSA 180 RMAPHAPLLP RAPSPLHYTV QPSGTGVTAT SPLVLDPVPV IESPTTATKR VRLFGVNLDN 240 PHSGDGGGES SNHGNALSLQ MPTWRQRDPT LRLLELPSHG AGSSAASSPS SSSSSKREAH 300 SALDLDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-57	1	106	7	113	B3 domain-containing transcription factor NGA1
5os9_B	4e-57	1	106	7	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000479G0550

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015689086.1	1e-166	PREDICTED: B3 domain-containing protein Os02g0683500
Refseq	XP_015689087.1	1e-166	PREDICTED: B3 domain-containing protein Os02g0683500
Swissprot	Q6EU30	1e-163	Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBL	J3LFX1	1e-164	J3LFX1_ORYBR; Uncharacterized protein
STRING	OB02G35380.1	1e-165	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01030.1	2e-60	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]