PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000480G0720
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 253aa    MW: 26953.6 Da    PI: 5.3307
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000480G0720genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35e-11142181342
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                      ++kr +r   NR +A+rsR RK+++i eLe+ v +L++e 
  PH01000480G0720 142 DSKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEV 181
                      689**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-13140204IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.795142194IPR004827Basic-leucine zipper domain
PfamPF001701.2E-9143189IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-13144198No hitNo description
SuperFamilySSF579597.74E-12144198No hitNo description
CDDcd147031.35E-25145196No hitNo description
PROSITE patternPS000360147162IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MATGGHRWPG GGGIVADHGH HHGGAAAWAE EFAEFAASRR GAHRRSLSDS VAFVEVAPVD  60
CGGEFDRLDD DQLMSMFPDE GGGGSAPGSE NGSSDSDGDK HGAAAGATSC KDRYDDEQNE  120
AAPQDQPAPG QASAASSELI QDSKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTTLQNE  180
VSVLSPRVAF LDQQRTILTV GNSHLKQRIA ALAQDKIFKD GEQFIDQNNL GCLSFPNPNL  240
LGFVSCYILT SS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000480G0720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085531e-105AK108553.1 Oryza sativa Japonica Group cDNA clone:002-144-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969997.11e-101basic leucine zipper 6
SwissprotQ5JMK65e-86BZP06_ORYSJ; Basic leucine zipper 6
TrEMBLA0A0A9PQJ51e-102A0A0A9PQJ5_ARUDO; Uncharacterized protein
STRINGSi002546m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.17e-41bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]