PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000481G0620
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CO-like
Protein Properties Length: 356aa    MW: 38029.8 Da    PI: 6.3163
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000481G0620genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.6e-051352439
         zf-B_box  4 rkCpeHeekelqlfCedCqq.llCedCllee.Hkg..Htv 39
                     r C ++e  ++  +C++C+  +lC  C     H +  H++
  PH01000481G0620 13 RPCGTCEASPAAVHCRTCGGaYLCTACDARPaHARagHER 52
                     67****************977*******999997788986 PP
2zf-B_box21.26.2e-075397341
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      ++C+ +e  ++   C+ +   lC++C   +H        H ++p
  PH01000481G0620 53 VWMCEVCELAPAAVTCKADAAVLCATCDADIHDAnplarrHARIP 97
                     689*****************************4466666777666 PP
3CCT71.12.7e-24280323144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpRvKGrF+k++
  PH01000481G0620 280 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRVKGRFAKRT 323
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.00221055IPR000315B-box-type zinc finger
CDDcd000210.001121355No hitNo description
PROSITE profilePS5011910.3525198IPR000315B-box-type zinc finger
CDDcd000211.43E-55498No hitNo description
SMARTSM003365.5E-85698IPR000315B-box-type zinc finger
PROSITE profilePS5101716.956280322IPR010402CCT domain
PfamPF062034.2E-18280322IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMELHKYWGV GGRPCGTCEA SPAAVHCRTC GGAYLCTACD ARPAHARAGH ERVWMCEVCE  60
LAPAAVTCKA DAAVLCATCD ADIHDANPLA RRHARIPVAP IGSAAAAAEA MLFGTGEAEP  120
EEKKANPAAA AEQQQQHEMN LNVDAKDMKL DYLFSDLHPY FNVEFAHFPH ADSVVPNGAG  180
AGSAVELDFT CGLGAKPSYS SYTATSLAHS GSSSEVGVVP EAICGGGGSI ELEFTRPKPQ  240
ACMPYTATPP NHSVSSVDVG VVPERGEGAV VRAAVMGEGR EARLMRYREK RKNRRFEKTI  300
RYASRKAYAE TRPRVKGRFA KRTDHDAEDA EAEAEAEAAV PSSYMFDFGY GVVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000481G0620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0963180.0FP096318.1 Phyllostachys edulis cDNA clone: bphylf059i05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641209.10.0zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A3S6H6460.0A0A3S6H646_9POAL; Constans-like protein
STRINGOPUNC06G21040.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-60CONSTANS-like 5