PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000483G0220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 867aa    MW: 96154.9 Da    PI: 6.0637
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000483G0220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.5e-181191843099
                      ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++  ++l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   ++++ +l+++++r+
  PH01000483G0220 119 PA--QELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--WNDNNQLLLGIRRA 184
                      33..48************************************************..7777778***9997 PP
2Auxin_resp118.55.2e-39209292183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k
  PH01000483G0220 209 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDGVRWPNSHWRSVK 292
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010199.0E-11102185IPR003340B3 DNA binding domain
SuperFamilySSF1019365.23E-26112212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-26112198IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-15118184IPR003340B3 DNA binding domain
CDDcd100171.75E-11121183No hitNo description
PROSITE profilePS5086311.053122185IPR003340B3 DNA binding domain
PfamPF065075.5E-34209292IPR010525Auxin response factor
SuperFamilySSF542772.45E-7725810No hitNo description
PfamPF023091.1E-8727820IPR033389AUX/IAA domain
PROSITE profilePS5174523.164734818IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MRLSSSAGSI LPTQAASSPE AVEEQKCLNS ELWHACAGPL VSLPAVGSRV VYFAQGHSEQ  60
VAASTNKEME SQIPNYPNLP PQLICQLHNV TMHADAETDE VYAQMTLQPL SPDFTQQPPA  120
QELMAKDLHG NEWKFRHIFR GQPKRHLLTT GWSVFISAKR LVAGDSVLFI WNDNNQLLLG  180
IRRANRPQTV MPSSVLSSDS MHIGLLAAAA HAASTNSRFT IFYNPRASPS EFVIPLAKYV  240
KAVYHTRISV GMRFRMLFET EESSVRRYMG TITGISDLDG VRWPNSHWRS VKVGWDESTA  300
GERQPRVSLW EIEPLTTFPM YPSPFPLRLK RPWPTGLPSL HGGKDDDLTS SLMWLRDSAN  360
PGFQSLNFGG LGMSPWMQPR LDASLLGLQP DIYQTMAATA FQDPTKQVPP TILQFQQPQS  420
IVGRAASLLP SQILQQVQPQ FQQQPYLQNI NETTIQGQAQ SEFLQQQLQR CQSFNEQKPQ  480
LQLQQQQQES QQQQQQQSQC VQVPQHQQMQ QQKNMANYQS VSNTLSTFSQ LSSVPQSSPM  540
TLQTVSPFSQ PQGFSDTNMS SLPPSNASTM HNTLRPFSSE AASHQSMPRP TAIPVPDPWS  600
SKRVAVESLL HPQPQVTSHI EQLDSTPPSI PQSSALAPLP GRGCLVDQDG NSDPQNHLLF  660
GVNIDSQSLL MQGGISSLHS ENDSTAIPYS TSNFLSPSQN DFPLDQTLNS SCCLDESGYA  720
PCSQNSDQVN RPPATFVKVY KSGTYGRSLD ITRFSSYHEL RRELGHLFGL EGQLEDPLRS  780
GWQLVFVDRE EDVLLVGDDP WQEFVNSVSC IKILSPQEVQ QMGKQGLELL SSAPARRLVS  840
SCDDYVSRQE SRSLSTGIAS VGSVEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1272831351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000483G0220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032800.0AK103280.1 Oryza sativa Japonica Group cDNA clone:J033124L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656378.10.0PREDICTED: auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLJ3MGU80.0J3MGU8_ORYBR; Auxin response factor
STRINGOB06G32420.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]