PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000489G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 263aa    MW: 28416.1 Da    PI: 8.7456
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000489G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57e-117096127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C +++rtG C++G +C+F+H+p
  PH01000489G0200 70 PGEPDCTYYLRTGLCRFGMSCRFNHPP 96
                     5789*********************97 PP
2zf-CCCH38.91.4e-12117141327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  PH01000489G0200 117 QPECQYYLKTGTCKFGPTCKFHHPR 141
                      799********************96 PP
3zf-CCCH382.7e-12163187327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C ++++tG+CkyG++CkF+H++
  PH01000489G0200 163 EKECAYYLKTGQCKYGNTCKFHHPE 187
                      679********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-56996IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9716997IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-87196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-57497IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-47595IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694114142IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6114141IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10117141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7118143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5120142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906160188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-7160187IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5160187IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-10163187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5166186IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDDAGRASAP AVVTVTASAA APSPPPPPPA TTATDTPSPD PAALYEDGMW QQMAMSSGAT  60
VQPGAYPERP GEPDCTYYLR TGLCRFGMSC RFNHPPDRNL AIASARMKGE YPERVGQPEC  120
QYYLKTGTCK FGPTCKFHHP REKAGIAGRV QLNTLGYPLR PNEKECAYYL KTGQCKYGNT  180
CKFHHPELFN AVASSRGSPI YPSVHTSASA GPHSYTGTIA SWTFPRGSFI PSPRWQSPSN  240
YAPVIVPQGL VQVPSWNSYP VR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000489G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679460.0AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971057.11e-170zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB51e-156C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLK3XI361e-168K3XI36_SETIT; Uncharacterized protein
STRINGSi001558m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-92zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]