PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000489G0730
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 165aa    MW: 18360.7 Da    PI: 7.5401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000489G0730genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000757193123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  Cg++F +   L  H ++H
  PH01000489G0730 71 FECRTCGRRFASFQALGGHRSSH 93
                     89**********99999999888 PP
2zf-C2H213.10.00028106128123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg  F +   L  H+r+H
  PH01000489G0730 106 HTCGVCGLGFETGQALGGHMRRH 128
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-107095IPR007087Zinc finger, C2H2
SuperFamilySSF576676.27E-771128No hitNo description
SMARTSM003550.387193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2637198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
PfamPF139125.1E-9106129IPR007087Zinc finger, C2H2
PROSITE profilePS501578.954106133IPR007087Zinc finger, C2H2
SMARTSM003550.22106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKRARDDAAV MEEEDSDLLH DEEEEEGEEH GGQLVECDVL LSLARGTSHE EDAVPRKKPR  60
RRRRGRRPAA FECRTCGRRF ASFQALGGHR SSHLRPSKRR AICLKHTCGV CGLGFETGQA  120
LGGHMRRHWP GKTDGGGDMD LDLKQIMVGE SRPTSTLQLL DLFV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15966RRRRRGRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000489G0730
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1006480.0FP100648.1 Phyllostachys edulis cDNA clone: bphyem127g11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317868.13e-31zinc finger protein ZAT5-like
TrEMBLI1R2881e-37I1R288_ORYGL; Uncharacterized protein
STRINGORGLA11G0188000.12e-38(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-20C2H2 family protein