PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000489G0740
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 151aa    MW: 16276.5 Da    PI: 11.3316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000489G0740genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000514264123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  Cg++F +   L  H  +H
  PH01000489G0740 42 FQCRTCGRRFATFQALGGHRTSH 64
                     89**********99998888777 PP
2zf-C2H214.20.0001391113123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cgk F +   L  H+r+H
  PH01000489G0740  91 HRCDTCGKEFLTGQALGGHMRRH 113
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.57E-941113No hitNo description
PfamPF139121.4E-94166IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6994269IPR007087Zinc finger, C2H2
SMARTSM003550.194264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139124.8E-1290115IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.94991118IPR007087Zinc finger, C2H2
SMARTSM003550.04491113IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.3E-491113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEVATGARAS PASLLLLLSL SLSSASRMIA KNSKRVQLDG TFQCRTCGRR FATFQALGGH  60
RTSHKRPRVR ADGLELLLGA RPGKGIARPV HRCDTCGKEF LTGQALGGHM RRHRPARAAA  120
RTWAETTSSG LSEQHDDDEN DAPSTLIQFI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000489G0740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340458e-42AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK0624918e-42AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence.
GenBankAK1052268e-42AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence.
GenBankAP0149678e-42AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAY3058668e-42AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
GenBankCP0126198e-42CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankCT8333228e-42CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828381.11e-52zinc finger protein ZAT11-like
TrEMBLA0A2S3IFT93e-51A0A2S3IFT9_9POAL; Uncharacterized protein
STRINGPavir.Ha00194.1.p1e-48(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.16e-19C2H2 family protein