PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000491G0570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 393aa    MW: 41801.7 Da    PI: 6.7035
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000491G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-08117136626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck+Gd C FaHg
  PH01000491G0570 117 CPDFRK-GGCKRGDACEFAHG 136
                      ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.83E-5110140IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-4111137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868111138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6115138IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6117136IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258146170IPR000571Zinc finger, CCCH-type
SMARTSM0035612146169IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MMMMGEGAHA PPWQHMAPVS GVEGGAGGGA GDEVSPYLLD ALRHYLPSNE AVGVGEDDEE  60
AAAVDAYACD EFRMYEFKVR RCARGRSHDW TECPFAHPGE KARRRDPRRY FYSGTSCPDF  120
RKGGCKRGDA CEFAHGVFEC WLHPARYRTQ PCKDGTACRR RVCFFAHTPD QLRVLPPPQQ  180
QGGVSSPRSA ASSPLAESYD GSPLRRQAFE SYLTKSIMSS SPTSTLVSPP RSPPSESPPL  240
SPDAAGALRR GSWPGVGSPV NDVLASLRQL RLVSPRSAPS GGSFLAGYGP SAAFGSPKSP  300
AGLYSLPSTS TRPSPVTVIT ASGATVTVEP LDLGLIEEEP VERVESGRAL REKVFERLSK  360
EATVSNDTAT ATTAEGATAA APDVGWVSDL IN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000491G0570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960911.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N40.0C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0A9E0J00.0A0A0A9E0J0_ARUDO; Uncharacterized protein
STRINGONIVA05G06810.10.0(Oryza nivara)
STRINGORGLA05G0055500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.17e-68C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]