PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000491G0810
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 283aa    MW: 29880.9 Da    PI: 10.3105
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000491G0810genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.8e-14112156347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ +  +lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  PH01000491G0810 112 PWTEEEHRMFLAGLDKLGKGDWRGISRHFITTRTPTQVASHAQKY 156
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.229105161IPR017930Myb domain
SuperFamilySSF466892.3E-18106162IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-18108160IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.7E-11109155IPR009057Homeodomain-like
SMARTSM007174.6E-11109159IPR001005SANT/Myb domain
PfamPF002492.0E-11112156IPR001005SANT/Myb domain
CDDcd001679.81E-10112157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MARKCSSCGN NGHNSRTCSG HRGLENSSSG NTTCGGLRLF GVQLQVGSYP LKKCLSMECL  60
SPAAAAAASN ASSSVSSSSS LVSIEESAER VSGGYLSDGL LGRAQERKKG VPWTEEEHRM  120
FLAGLDKLGK GDWRGISRHF ITTRTPTQVA SHAQKYFLRQ NSLTQKKRRS SLFDVVEGSK  180
KAAMPRTASV SELQFPSLSL GVDAAKKEAV LLPPCLNLMS STSPGGSAGA SQSQSPSSMT  240
LKAKPQVHLQ MPDLELKMST SRLSDQSGPS PSTPLFGTIR VT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000491G0810
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0959130.0FP095913.1 Phyllostachys edulis cDNA clone: bphyst033e20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809031.11e-147transcription factor MYBS3-like
SwissprotQ7XC576e-51MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A2S3H8S61e-146A0A2S3H8S6_9POAL; Uncharacterized protein
TrEMBLA0A2T7E9441e-146A0A2T7E944_9POAL; Uncharacterized protein
STRINGPavir.Ca00821.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-48MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]