PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000493G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 259aa    MW: 28139.5 Da    PI: 5.1983
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000493G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-20122170355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a++ a+++++g
  PH01000493G0150 122 YRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDCAALEFRG 170
                      9*******.**********82....48*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.422121178IPR001471AP2/ERF domain
SMARTSM003806.1E-36121184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-32121179IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23121178IPR016177DNA-binding domain
CDDcd000187.18E-32122179No hitNo description
PRINTSPR003671.6E-11122133IPR001471AP2/ERF domain
PfamPF008474.7E-14122170IPR001471AP2/ERF domain
PRINTSPR003671.6E-11144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MPTAKQDLKT QFDGHGGQAS SSADANTVME FAGRLISSEQ EHAFIVAVLR HVVSGYSTAP  60
PEIVTVACEE VCLCGIDGCL GCDNFGVGGG AEMVQAANYG VEQMAAATAG GQRRRRRKKN  120
MYRGVRQRPW GKWAAEIRDP RRAVRKWLGT FDTAEEAARA YDCAALEFRG PRAKLNFPNY  180
EPLPGHQNGN GGDVVTVAKT ETLTPSPCSV DAEERTRGER QLGVDELDDQ LWQGLQDLMK  240
LDEWDLWFAP FSGAASSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20118178263ATERF1
3gcc_A3e-20118178263ATERF1
5wx9_A4e-201221791573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RRRRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000493G0150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275275e-72KJ727527.1 Zea mays clone pUT5387 AP2-EREBP transcription factor (EREB172) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611044.22e-91ethylene-responsive transcription factor ERF109
TrEMBLF2DUB21e-95F2DUB2_HORVV; Predicted protein
STRINGOPUNC09G11150.13e-95(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.17e-22ERF family protein