PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000496G0570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 207aa    MW: 23202.8 Da    PI: 5.0363
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000496G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182477456
                     -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  PH01000496G0570 24 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 77
                     458**************8899********************************9 PP
2HD-ZIP_I/II122.32.4e-3922115193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L+++l++
  PH01000496G0570  22 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEQDYAALRAQYDALHARVESLKQEKLTLATQLED 115
                      69*****************9999******************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.42E-171581IPR009057Homeodomain-like
PROSITE profilePS5007117.21879IPR001356Homeobox domain
SMARTSM003898.5E-172183IPR001356Homeobox domain
CDDcd000864.65E-162380No hitNo description
Gene3DG3DSA:1.10.10.607.1E-192486IPR009057Homeodomain-like
PfamPF000461.0E-152477IPR001356Homeobox domain
PRINTSPR000314.5E-75059IPR000047Helix-turn-helix motif
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PRINTSPR000314.5E-75975IPR000047Helix-turn-helix motif
PfamPF021831.4E-1379120IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MESDCQFLMV PPQLHQGAGG GERKRRFTEE QVRSLETTFH ARRAKLEPRE KAELARELGL  60
QPRQVAIWFQ NKRARWRSKQ LEQDYAALRA QYDALHARVE SLKQEKLTLA TQLEDVRAKL  120
NERQDQSGGC GGAEGDDKRN NVSSCLVEDN KGAAPVVDVS EDSAADGYEY DHLAYGGGLP  180
EPFCATPELW ETWPLVEWNA VACQST*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000496G0570
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152926.11e-103homeobox-leucine zipper protein HOX24-like
RefseqXP_020173935.11e-103homeobox-leucine zipper protein HOX24-like
SwissprotA2X7U13e-92HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A3B6QFX11e-101A0A3B6QFX1_WHEAT; Uncharacterized protein
TrEMBLA0A453P6J11e-101A0A453P6J1_AEGTS; Uncharacterized protein
TrEMBLN1QQN61e-101N1QQN6_AEGTA; Homeobox-leucine zipper protein HOX24
STRINGEMT016761e-102(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-34homeobox 7