PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000496G0760
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 649aa    MW: 72038.3 Da    PI: 5.4956
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000496G0760genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.4e-094074441954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  PH01000496G0760 407 FEHffHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 444
                      664459******************************88 PP
2BELL119.41.6e-38270341172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+qelq+k akL+ +l+eVd++Yk+y++q+qtv+ssF++vag gsakpYt++Al +iSrhFrcLkdai +qi
  PH01000496G0760 270 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQTVVSSFDVVAGPGSAKPYTAVALETISRHFRCLKDAINDQI 341
                      689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-56194339IPR006563POX domain
PfamPF075263.3E-50200337IPR006563POX domain
PROSITE profilePS5007112.26385448IPR001356Homeobox domain
SMARTSM003897.0E-9388452IPR001356Homeobox domain
CDDcd000863.27E-12388449No hitNo description
SuperFamilySSF466891.41E-17389455IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-28391454IPR009057Homeodomain-like
PfamPF059201.2E-17405444IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MATYYSSPGS ERDSQNMYSR DPSGASYPMP SALGNLLYLN NPSSGPYMEF GGILQPQQNC  60
MEMPDPGHPS AMSEDSSARE SDMLASHQGQ RSFGPVKYMK NEMLMHMMDG EQSGCAELIH  120
DDAHNGAQLE FGVLNNHSSS NVPSVQGQGL SLSLNTQILA PSLPYWSIKP DMLTPHSYHD  180
SLRVDDIRMR NMQSEASRAI RNSRYLKAAQ DLLDEVVNVW KSIKQKAQKE QAEAGKADGK  240
ETDGGPKSEG VSSNPQESGA NAAPELSTAE KQELQNKMAK LMAMLDEVDR KYKHYYHQMQ  300
TVVSSFDVVA GPGSAKPYTA VALETISRHF RCLKDAINDQ IDVIRKKLGE EENSSGKEGK  360
LTRLRYIDQQ LRQQRAFQQY GMIPQNAWRP QRGLPENSVT ILRAWLFEHF FHPYPKDSEK  420
LMLARQTGLT RSQISNWFIN ARVRIWKPMI EDMYREEIGD LEQESNSSSD NVPRSKDKVV  480
SSEEKEDLKS ARTRVCETSQ LSESRASIGT MNVGGAPVGF ENEANPDDSF MNLMMKDQRS  540
GEVNGGLLLH NAVAQHSDEN TGFMAYHLAE LGRYGNGNVS LTLGLQHSGS SLSVPSAQPN  600
FPGVSDDDIY NAAAPLGVGV ASSDYESMNQ MDQRQRFEHS PLLHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16394451158Homeobox protein Meis1
4xrs_B2e-16394451158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000496G0760
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704650.0AK070465.1 Oryza sativa Japonica Group cDNA clone:J023054P21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664239.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_006664240.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLJ3NFA90.0J3NFA9_ORYBR; Uncharacterized protein
STRINGOB12G26670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-108BEL1-like homeodomain 6