PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000501G0450
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 356aa    MW: 38704.8 Da    PI: 7.3801
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000501G0450genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.27.9e-54191451129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL++k+++ ++ + +++ e+d++k+ePwdLp++++ +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkd+e+++
  PH01000501G0450  19 LPPGFRFHPTDEELITHYLARKAADPRFAA-RAVGEADLNKCEPWDLPSRATMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDREIFR 111
                      79*************************999.88***************988899**************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++lvg+kktLvf++grap+g kt Wvmheyrle
  PH01000501G0450 112 -AKALVGMKKTLVFFTGRAPRGGKTGWVMHEYRLE 145
                      .999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-639172IPR003441NAC domain
PROSITE profilePS5100558.88219172IPR003441NAC domain
PfamPF023657.0E-2920144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEQDVHHHQQ QQQPMYLHLP PGFRFHPTDE ELITHYLARK AADPRFAARA VGEADLNKCE  60
PWDLPSRATM GEKEWYFFCV RDRKYPTGLR TNRATESGYW KATGKDREIF RAKALVGMKK  120
TLVFFTGRAP RGGKTGWVMH EYRLEGKHGA AYGLPKAATS KDEWVLCRVF KKSSEPSSVA  180
GKRGACTGMA GVGFSMSMAD VDLTSCALPP LMDVSGGCSG GTTSHSAAAV TSFAPPPPEH  240
VTCFSNALEG QFLNPPFLLP SAPMTTTAQG AAVAVDHLTM ASASPFLANM QMQYAQDVGV  300
GGMVHELLEG GWYCKGERER LSGASQDTGL TSEVNPAEIS SSRQHVDHEA SLWGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-571717513171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000501G0450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0952990.0FP095299.1 Phyllostachys edulis cDNA clone: bphylf045c18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235594.11e-171NAC domain-containing protein 92 isoform X2
TrEMBLA0A3L6RW051e-172A0A3L6RW05_PANMI; NAC domain-containing protein 92-like
STRINGBRADI3G46900.11e-171(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-91NAC domain containing protein 100