PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000506G0350
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 262aa    MW: 28914.6 Da    PI: 9.035
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000506G0350genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-133781147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  PH01000506G0350 37 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 81
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.03E-173187IPR009057Homeodomain-like
PROSITE profilePS5129415.4083286IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-73587IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-183584IPR006447Myb domain, plants
SMARTSM007175.3E-113684IPR001005SANT/Myb domain
PfamPF002491.9E-113781IPR001005SANT/Myb domain
CDDcd001671.14E-83982No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVSANAPPPP PADASAATSG EDASKKVRKP YTITKSRESW TEQEHDKFLE ALQLFDRDWK  60
KIEAFVGSKT VIQIRSHAQK YFLKVQKNGT SEHVPPPRPK RKAAHPYPQK ASKNEPGYAL  120
KTDSSSMLRN SGMNATVSSW THNCIPPDIA SSMVKEDLGA GTMGPNNFCS SSTEGPPRAW  180
QPGETNDQIN QVPSLRLMPD FAQVYSFLGS VFDPSTSGHL QKLKEMNPID VETALLLMRN  240
LSINLTSPDF EDQRKLLSSS LS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000506G0350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1001780.0FP100178.1 Phyllostachys edulis cDNA clone: bphyem202k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647688.20.0PREDICTED: protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-102RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0E0K3M61e-177A0A0E0K3M6_ORYPU; Uncharacterized protein
STRINGOPUNC02G25660.11e-178(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-90MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]