PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000508G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 598aa    MW: 66058.2 Da    PI: 8.5164
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000508G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-14360404347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
  PH01000508G0070 360 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 404
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.6205.6E-6624199IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523749.09E-4124169No hitNo description
PfamPF005791.2E-2756199IPR002305Aminoacyl-tRNA synthetase, class Ic
SuperFamilySSF523749.09E-41199340No hitNo description
Gene3DG3DSA:3.40.50.6205.8E-15200238IPR014729Rossmann-like alpha/beta/alpha sandwich fold
PfamPF005791.2E-7203240IPR002305Aminoacyl-tRNA synthetase, class Ic
Gene3DG3DSA:1.10.240.109.8E-41239344No hitNo description
PROSITE profilePS5129417.642353409IPR017930Myb domain
SuperFamilySSF466892.23E-16357409IPR009057Homeodomain-like
SMARTSM007171.4E-11357407IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.8E-17358408IPR006447Myb domain, plants
PfamPF002494.3E-12360404IPR001005SANT/Myb domain
CDDcd001678.57E-10360405No hitNo description
Gene3DG3DSA:1.10.10.607.1E-12360403IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006418Biological ProcesstRNA aminoacylation for protein translation
GO:0003677Molecular FunctionDNA binding
GO:0004812Molecular Functionaminoacyl-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MDAPTAASSS AGAAEDLARG VAAMSLDERF ATLRSIGEEC IQEDELMRLL QNKPVPVCYD  60
GFEPSGRMHI AQGVVKTINV NKMVRAGCKV KIWIADWFAQ LNNKMGGDLK KIQTVGRYMI  120
EIWKAAGMNL DGVEFLWSSE EINNRAGEYW PLVMDIARKN NVKRITRCCQ IMGRSDQDEL  180
TAAQIFYPCM QCADIFFLKI MGRSDQDELT AAQIFYPCMQ CADIFFLKAD ICQLGMDQRK  240
AQVNLKIKQA FCPPKIVDGN PCLEYIKYIV FPWFRKFEVV RKESNGGNKT FANMDELITD  300
YASGALHPAD VKPALAKAIN EILQPVRDHF NSNSEAKVLL NTVKCYVARA SDLVQVKAVP  360
WTEEEHRTFL AGLEKLGKGD WRGIAKNFVT TRTPTQVASH AQKYFLRQTN PNKKKRRSSL  420
FDMMARDLSP APNCPTLPPS MAKVHEMVVM TKQLQNSSLE GVSSSNTANR APQVARDLPP  480
PVPSFKATNV DTSLSKTNHM EGFLRTPLPF RPIAIIAEGT SSPTPVTANM TAPALQANLT  540
VCTSTFLSPQ SDPSPLPPPK ACTPAEKKDL ELTVGPPSQQ TMTNISSQNA VGVIQVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3vgj_A1e-1102634627369Tyrosyl-tRNA synthetase, putative
3vgj_B1e-1102634627369Tyrosyl-tRNA synthetase, putative
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412416KKKRR
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr). {ECO:0000250|UniProtKB:Q9Y2Z4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000508G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0917460.0FP091746.1 Phyllostachys edulis cDNA clone: bphylf054g23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822646.10.0tyrosine--tRNA ligase 1, cytoplasmic
SwissprotQ8S9J21e-143SYYC1_ARATH; Tyrosine--tRNA ligase 1, cytoplasmic
TrEMBLQ6Z0P00.0Q6Z0P0_ORYSJ; Putative tyrosine-tRNA ligase
STRINGPavir.Fa01955.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.18e-33MYB_related family protein
Publications ? help Back to Top
  1. Duchêne AM, et al.
    Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(45): p. 16484-9
    [PMID:16251277]
  2. Berg M,Rogers R,Muralla R,Meinke D
    Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis.
    Plant J., 2005. 44(5): p. 866-78
    [PMID:16297076]