PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000519G0700

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

TCP

Protein Properties

Length: 324aa MW: 33700.1 Da PI: 10.224

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000519G0700	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.1	2.2e-40	55	154	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ PH01000519G0700 55 APKRNSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSLSAPahlraa 148 799******************************************************************9997777777777755555444333 PP TCP 89 .....k 89 + PH01000519G0700 149 lpspaA 154 333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.5E-39	60	195	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.861	61	115	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MEVAGDAGGG RRPNFPLQLL EKKEGQPCSS TAVGGTSGAG GNGNGSGEVQ VRKTAPKRNS 60 TKDRHTKVEG RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP AVIAATGTGT 120 IPANFTSLNI SLRSSGSSLS APAHLRAALP SPAAAARFGA RADAWDRVVG FGFPSDGPAS 180 SSSSPSPLLL NFHSGSVGLD VQAQPSPSAA GPLQEEAMGA RNAATATAVP AADGRLEAGG 240 LWATDKRVRL LTNGVARGNT REWAMLMCWA YVSAIGGMIS CPECGQHSPA AESRRKRGGG 300 MRPIPCWSCR LFSVPYWSCH MLS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000519G0700

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005733	0.0	AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03.
GenBank	AP005848	0.0	AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	GQ229483	0.0	GQ229483.1 Oryza sativa Japonica Group TCP transcription factor (TCP6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825808.1	2e-98	transcription factor TCP14-like
TrEMBL	A0A0D9YY76	3e-97	A0A0D9YY76_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0CRH2	3e-97	A0A0E0CRH2_9ORYZ; Uncharacterized protein
TrEMBL	I1P492	3e-97	I1P492_ORYGL; Uncharacterized protein
STRING	Pavir.Ab03005.1.p	3e-98	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3744	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-46	TCP family protein