PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000524G0850
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 223aa    MW: 25178.7 Da    PI: 9.1113
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000524G0850genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.32.8e-2241102259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                      dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v++++ +dp ++ +tY ++H+++
  PH01000524G0850  41 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPTTKQVQQKDtDDPPLFAVTYFNHHTCN 102
                      8***************************99999*******976527899***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-2329103IPR003657WRKY domain
SuperFamilySSF1182903.14E-2233103IPR003657WRKY domain
PROSITE profilePS5081115.81235104IPR003657WRKY domain
SMARTSM007743.7E-3240103IPR003657WRKY domain
PfamPF031062.7E-2441101IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MALDSVPSYP SDLGSNRPAR TQQRIRKDER TWTTETYAPY DDGHQWRKYG EKKLSNSNFP  60
RFYYRCTYKN DMKCPTTKQV QQKDTDDPPL FAVTYFNHHT CNSSSRPIGS SPNIAAQSSS  120
RKAVSICFNS HATSEQPTFL SSSTSLQSPS IQSYRANQQL DRSAYARQFQ WTDTSSSSSN  180
VPVKMEVDDF AATSASSNVT TGALSRTLLP IGQSRCIEYF HFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-1641101968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000524G0850
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0992360.0FP099236.1 Phyllostachys edulis cDNA clone: bphyem103j05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172253.11e-124WRKY transcription factor 55-like
TrEMBLA0A0D9XWA01e-123A0A0D9XWA0_9ORYZ; Uncharacterized protein
STRINGLPERR12G01060.11e-123(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-21WRKY DNA-binding protein 55