PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000525G0560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 368aa    MW: 40905.3 Da    PI: 5.4387
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000525G0560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.2e-17223264346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++eE++ll++++++lG++ W++Ia +++ gRt+k++k++w++
  PH01000525G0560 223 SFSEEEEDLLIKLHALLGNR-WSLIAGRLP-GRTDKEVKNHWNS 264
                      59******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF118051.8E-9135IPR021763Protein of unknown function DUF3326
PfamPF118053.7E-3250154IPR021763Protein of unknown function DUF3326
SuperFamilySSF466895.07E-14208275IPR009057Homeodomain-like
PROSITE profilePS5129422.419216270IPR017930Myb domain
SMARTSM007176.4E-14220268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-21223267IPR009057Homeodomain-like
PfamPF002491.2E-15223264IPR001005SANT/Myb domain
CDDcd001679.47E-13223263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MPNTLYVEGY ALDRFAEGSW ALQPVHQNKV SDALALEITH SRTQIRLIHV TVGLVLDSGI  60
EEELRLRHLQ VADAARASLG LPVVEYIVTD APLEIKTWFD PKCGKSTGNI GNSDSLLRAV  120
DALVNHSDVN AVVVVARFPD DDPENSDCYR EGKIILVCPN WVYLSILCAC WVKQHPSVCD  180
AVQKTLVEEM PLIITVQENE TVLDDTPDKF NIQAVRGTLL VRSFSEEEED LLIKLHALLG  240
NRWSLIAGRL PGRTDKEVKN HWNSQMRTKL KSMGVDPDNH RAKTLPLPDH EQRRARNECE  300
EHRAKHSDRD PSSSSKDDIA VGDCAVSDAG SSSNRARQEQ RLAGLNLDLT LSTPCIYFGE  360
ECKKCGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000525G0560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020405150.12e-88uncharacterized protein LOC100273303 isoform X3
TrEMBLA0A446N2581e-83A0A446N258_TRITD; Uncharacterized protein
STRINGTRIUR3_20384-P14e-84(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1077288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.11e-24MYB-like 2