PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000527G0320
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 258aa    MW: 28152.5 Da    PI: 6.0917
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000527G0320genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-152771147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +++++E++++v +++ lG++ W+ Ia++++ gRt++++k++w++ 
  PH01000527G0320 27 RSSFSQQEEDIIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 71
                     678*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.275121IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-5720IPR009057Homeodomain-like
SuperFamilySSF466898.98E-21881IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-252176IPR009057Homeodomain-like
PROSITE profilePS5129424.1342276IPR017930Myb domain
SMARTSM007174.0E-142674IPR001005SANT/Myb domain
PfamPF002492.3E-132771IPR001005SANT/Myb domain
CDDcd001678.09E-112969No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MRAPGLQRCG KSCRLRWINY LRPDLKRSSF SQQEEDIIVG LHEILGNRWS QIASHLPGRT  60
DNEIKNFWNS CLKRKLRQRG IDPSTHKPIS SAAAVALDPA SKDQKPPAAI AADSFALKQQ  120
QVFDPFPVTD GFGGGFDATA MALYGHLGGK DAAGFVDYSS VLDVSENLRY GESSSNSSNW  180
KCALGAPEVN NVLEAGEALH WASESKVEPL VGYGGEGEAL EHKFVLPCHG QQEQSMPHFD  240
FDVGRGAVVG EFNLEYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2387640108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17177LKRKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000527G0320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117820.0AK111782.1 Oryza sativa Japonica Group cDNA clone:J023084H22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644576.11e-152PREDICTED: myb-related protein Hv33-like
SwissprotP200274e-75MYB3_HORVU; Myb-related protein Hv33
TrEMBLJ3L3A01e-151J3L3A0_ORYBR; Uncharacterized protein
STRINGOB01G37060.11e-152(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.17e-49myb domain protein 86